Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq42 140 5e-28 >seq42 Length=30274277 Score = 140 bits (154), Expect = 5e-28 Identities = 388/582 (67%), Gaps = 16/582 (3%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || || ||| | ||| | |||||||||||||| ||||| |||| || |||| Sbjct 25647517 TGTTCCCGATTCAGTACCCTGAAGTCTGGGAAATGTACAAGAAGGCCGAGGCGTCGTTTT 25647458 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| || ||||| || || |||||| | | ||||| | | | | | Sbjct 25647457 GGACAGCCGAGGAAGTCGACCTCTCTCAGGACCAGCGTCAATGGGAAAACC--TCACCAG 25647400 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 || ||| | || || || || | |||||||| |||| || || ||||||| Sbjct 25647399 CGAC-GAGAAGCACTTCATCAGTCATATCCTTGCCTTCTTCGCCGCTTCTGACGGAATCG 25647341 Query 125176 TCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGTG 125233 || ||| || || | | ||| | ||| | ||| || | |||| ||||| Sbjct 25647340 TCCTCGAAAACCTCGCCGGAAGGTTCATGAAGGAGGT--CCAGGTCGCCGAGGC-TCGTG 25647284 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || || ||||| || || ||||| ||| | ||||| || |||||| | || Sbjct 25647283 CCTTCTATGGATTTCAGATTGCCATTGAAAACATCCACTCCGAGATGTACAGTCTGTTGT 25647224 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGG 125352 | || ||| || ||||| | ||| ||| ||||||| |||||||||| || Sbjct 25647223 TAGAATCGTATATCAAGGATCCAAAGGAGAAAAACAGGCTCTTTCACGCAATCGATACCA 25647164 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGAC-AAGTCT 125411 | || | | || || || || || |||| | || |||||||| | | | || || Sbjct 25647163 TCCCCTGTGTAGCGAAGAAAGCCCAGTGGGCTCTCCGATGGATCGACGGCTCCGAAACCT 25647104 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471 | | |||| | ||| | ||||||||| ||| || ||||||||||| || || || Sbjct 25647103 TTG----CCGAACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATCTTCTTCTCCGGAAGC 25647048 Query 125472 TT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 || ||| | || || ||||| ||||| ||||| |||||||| ||| | || | || Sbjct 25647047 TTCTGCT-CGATATTCTGGCTAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCAAA 25646989 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||||| || || |||||||||||| ||||||| ||||| || Sbjct 25646988 TGAGTTAATCTCGCGAGACGAGGGCTTACACTGCGACTTCGC 25646947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741041535001320