Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq42 98.7 7e-16 seq57 93.3 3e-14 >seq42 Length=30274277 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 |||||||||| | | ||| |||||||||||||| ||||| || ||||||||||| || Sbjct 11520059 CCACCTCTCAGCCGGAGAACCAAATGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCC 11520000 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | || || | ||||| ||||| | || | | || ||||| || Sbjct 11519999 AAG-GTCCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGGG 11519941 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||| || ||||| ||||| ||||||| | || || || || | | ||||| Sbjct 11519940 GATTCCCTCCTTGTCTTGGATTTTTGCCTTTACATTGTCAATCGTGTCAGAACTCTCTAC 11519881 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| |||||||| || || || || || ||||| |||||||| Sbjct 11519880 TTCAAGGGTGATGGTTTTTCCAGTGAGTGTCTTAACAAAGATTTGCAT 11519833 Score = 95.1 bits (104), Expect = 9e-15 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-G 15193 ||||||||||||| | | ||| || |||||||| || || || || |||||||| || | Sbjct 11334294 TGCCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCG 11334353 Query 15194 CTTAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGT 15251 | ||| || | ||||| | ||||| ||||| |||| | | || ||||| Sbjct 11334354 CC---AATGTCCGACCATCTTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGGTCTG 11334410 Query 15252 TTGGAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTT 15310 ||||| || || ||||| ||||| ||| || ||| | || ||||| || | | Sbjct 11334411 GGGGAATACCCTCCTTGTCCTGGATTTTAGCT-TTCACATTATCGATGGTGTCTGAACTC 11334469 Query 15311 TCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || | |||||| ||||| || || || || || |||||||||||||| Sbjct 11334470 TCAACTTCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 11334522 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || || || ||||||||||| || | | ||| | ||||||| || Sbjct 11482281 TGAAGGGTTGATTCCTTCTGTATGTTGTAGTCAGCCAAAGTTCGACCATCTTCTAGCTGC 11482222 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT- 15279 || ||||| | || | | || ||||| |||||| ||||| ||||| |||||| Sbjct 11482221 TTACCAGCAAAGATTAGCCTCTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGAATTTTT 11482162 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || || || || | | ||||| || | ||| || |||||||| || Sbjct 11482161 GCT-TTCACATTATCAATAGTGTCTGAACTCTCTACTTCAAGGGTGATAGTTTTACCAGT 11482103 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||||||||| Sbjct 11482102 AAGGGTCTTCACAAAAATTTGCAT 11482079 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 |||||||||| | | ||| | |||||||||||| ||||| || ||||||||||| || Sbjct 11327182 CCACCTCTCAGCCGGAGAACCAGATGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCC 11327241 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | || || | ||||| ||||| | || | | || ||||| || Sbjct 11327242 AAG-GTCCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGGG 11327300 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||| || ||||| ||||| ||||||| | || || || || | | ||||| Sbjct 11327301 GATTCCCTCCTTGTCTTGGATTTTCGCCTTTACATTGTCAATTGTGTCAGAACTCTCTAC 11327360 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| |||||||| || || || || || ||||| |||||||| Sbjct 11327361 TTCAAGGGTGATGGTTTTTCCAGTGAGTGTCTTAACAAAGATTTGCAT 11327408 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | | || | || || ||||| ||||| || ||||| |||||| Sbjct 11327410 CCACCTCTCAAACGGAGGACCAGGTGGAGTGTGGACTCTTTCTGAATGTTATAATCGGCC 11327469 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | || | || || | || || ||||| | ||||| | ||| || || || Sbjct 11327470 AAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCAGGGGGG 11327529 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| ||||| ||||||| | || || ||||| | || || Sbjct 11327530 ATTCCTTCCTTGTCTTGGATTTTCGCCTTTACATTGTCAATCGTATCAGAGCTCTCAACT 11327589 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || || || || || ||||| |||||||| Sbjct 11327590 TCAAGGGTGATGGTCTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 11327636 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | | || | || || ||||| ||||| || ||||| |||||| Sbjct 11519831 CCACCTCTCAAACGGAGGACCAGGTGGAGTGTGGACTCTTTCTGAATGTTATAATCGGCC 11519772 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | || | || || | || || ||||| | ||||| | ||| || || || Sbjct 11519771 AAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCAGGGGGG 11519712 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| ||||| ||||||| | || || ||||| | || || Sbjct 11519711 ATTCCTTCCTTGTCTTGGATTTTCGCCTTTACATTGTCAATCGTATCAGAGCTCTCAACT 11519652 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || || || || || ||||| |||||||| Sbjct 11519651 TCAAGGGTGATGGTCTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 11519605 >seq57 Length=24021853 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || || || || ||||||||||| ||| ||| | | || || Sbjct 5916998 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTTCGCCCATCCTCA 5916939 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| ||| | |||| | || ||||| |||||| ||||| ||||| | Sbjct 5916938 AGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGTGGAATCCCTTCCTTGTCCTGA 5916879 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| || || | || ||||| ||| |||| || || | ||| ||||| || Sbjct 5916878 ATCTTCGCT-TTCACGTTGTCAATGGTGTCGGAGCTTTCGACCTCCAGGGTGATGGTCTT 5916820 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| |||||||| ||||| Sbjct 5916819 TCCGGTGAGGGTTTTCACAAAAATCTGCAT 5916790 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || ||||| || ||||||||||| ||| ||| ||||||| Sbjct 5891797 ACCAAGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCCGCGAGAGTTCGGCCGTCTTCC 5891738 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || ||| | |||| | || ||||| |||||| || || || || Sbjct 5891737 AGCTGCTTCCCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATGCCCTCCTTATCCTGG 5891678 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| || || | || ||||| ||| |||| || |||| ||||| || || Sbjct 5891677 ATCTTAGCT-TTCACGTTGTCAATGGTGTCGGAGCTTTCGACCTCTAGAGTAATTGTCTT 5891619 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| |||||||| ||||| Sbjct 5891618 TCCGGTTAGAGTTTTAACAAAAATCTGCAT 5891589 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || || || |||||||| |||||||||||| || ||| ||||||| Sbjct 5916770 ACCAAGTGCAGAGTTGACTCTTTTTGAATGTTGTAATCGGCGAGGGTTCGGCCGTCTTCC 5916711 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || ||| | |||| | || ||||| |||||| || || || || Sbjct 5916710 AGCTGCTTTCCGGCGAAAATCAGCCTCTGCTGGTCTGGTGGAATGCCCTCCTTATCCTGG 5916651 Query 15275 ATTTTGCTCTTT-ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || | |||| || | || ||||| ||| | || || || | ||| ||||| || Sbjct 5916650 ATCTT-CGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCGACCTCCAGGGTGATGGTCTT 5916592 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||||||||| ||||| Sbjct 5916591 TCCGGTGAGGGTTTTTACAAAAATCTGCAT 5916562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362170782389487