Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq42 104 2e-17 seq57 86.0 5e-12 >seq42 Length=30274277 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| | | |||| ||| | || ||||| || || || || ||||| ||| Sbjct 11481849 CCACCTCTCAAACGGAGAACCAAGTGAAGTGTGGACTCTTTCTGGATGTTATAATCAGCC 11481790 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | ||||| ||||| ||||| ||| |||| || |||||||| || ||| Sbjct 11481789 AATGTCCGGCCATCCTCAAGCTGCTTACCTGCAAAAATGAGCCTCTGCTGGTCTGGGGGA 11481730 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| |||||| ||| || | ||| || || | ||| | Sbjct 11481729 ATGCCCTCCTTGTCCTGGATTTTCGCTTTAACATTATCGATGGTGTCTGAACTCTCAACT 11481670 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||||||| ||||| || | || || |||||||||||||| Sbjct 11481669 TCAAGGGTAATGGTCTTACCAGTAAGGGTCTTCACAAAAATTTGCAT 11481623 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| | | |||| ||| | ||||||||||| || || ||||| |||||| Sbjct 11334296 CCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCC 11334355 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | || |||||||||||||| ||| | || || |||||||| || ||| Sbjct 11334356 AATGTCCGACCATCTTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGGTCTGGGGGA 11334415 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| ||||| ||| || | ||| || || | ||| | Sbjct 11334416 ATACCCTCCTTGTCCTGGATTTTAGCTTTCACATTATCGATGGTGTCTGAACTCTCAACT 11334475 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||| ||||| || || | || || |||||||||||||| Sbjct 11334476 TCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 11334522 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || || ||||||||||| |||||||| |||| || | | ||||| Sbjct 11326972 ACCAGGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGCCAGAGTCCTTCCATCCTCA 11327031 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||||||||| ||| | || || ||||||||||| ||| | ||||| ||||| Sbjct 11327032 AGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGG 11327091 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | | ||| ||||| |||| ||| | || ||||| || Sbjct 11327092 ATCTTTGCCTTCACATTGTCGATTGTATCAGAGCTCTCCACTTCAAGAGTGATGGTCTTC 11327151 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | || || ||||| ||||||||| Sbjct 11327152 CCGGTCAGCGTCTTTACAAATATTTGCATT 11327181 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| || || | |||| || | || ||||| || ||||| |||||||| | Sbjct 11327180 TTCCACCTCTCAGCCGGAGAACCAGATGAAGGGTGGACTCTTTCTGAATGTTGTAATCTG 11327239 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| || | ||||| ||||||||||| ||| | || || |||||||| || || Sbjct 11327240 CCAAGGTCCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGG 11327299 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| ||||| |||||| ||||| | | | | || || | ||| Sbjct 11327300 GGATTCCCTCCTTGTCTTGGATTTTCGCCTTTACATTGTCAATTGTGTCAGAACTCTCTA 11327359 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | ||| |||||||| || || | || || ||||| ||||||||| Sbjct 11327360 CTTCAAGGGTGATGGTTTTTCCAGTGAGTGTCTTAACAAAGATTTGCATT 11327409 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || |||||||| || || || ||||| |||| ||| | | |||||| Sbjct 11334770 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCAGCCAATGTCCGGCCATCCTCC 11334829 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| ||||| ||| | ||||| |||||||| || || | ||||| ||||| Sbjct 11334830 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCCTGG 11334889 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | | | | ||||| | ||| ||| | || ||||| || Sbjct 11334890 ATCTTTGCCTTCACGTTGTCAATTGTATCTGAACTCTCAACTTCAAGTGTGATGGTCTTT 11334949 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || |||| ||||||||||| ||||||||| Sbjct 11334950 CCAGTTAGTGTTTTGACAAATATTTGCATT 11334979 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| || || | |||| || | || ||||| || ||||| |||||||| | Sbjct 11520061 TTCCACCTCTCAGCCGGAGAACCAAATGAAGGGTGGACTCTTTCTGAATGTTGTAATCTG 11520002 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| || | ||||| ||||||||||| ||| | || || |||||||| || || Sbjct 11520001 CCAAGGTCCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGG 11519942 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| ||||| ||||| ||||| | | | | || || | ||| Sbjct 11519941 GGATTCCCTCCTTGTCTTGGATTTTTGCCTTTACATTGTCAATCGTGTCAGAACTCTCTA 11519882 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | ||| |||||||| || || | || || ||||| ||||||||| Sbjct 11519881 CTTCAAGGGTGATGGTTTTTCCAGTGAGTGTCTTAACAAAGATTTGCATT 11519832 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || || |||||||| || |||||||| |||| || | | ||||| Sbjct 11520269 ACCAGGTGAAGGGTGGATTCCTTTTGTATGTTGTAATCAGCCAGAGTCCTTCCATCCTCA 11520210 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||||||||| ||| | || || ||||||||||| ||| | ||||| ||||| Sbjct 11520209 AGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGG 11520150 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || ||| || || | | ||| || || |||| || | || ||||| || Sbjct 11520149 ATCTTCGCCTTCACATTGTCGATTGTGTCAGAGCTCTCCACCTCAAGAGTGATGGTCTTC 11520090 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | || || ||||| ||||||||| Sbjct 11520089 CCGGTCAGCGTCTTTACAAATATTTGCATT 11520060 >seq57 Length=24021853 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | |||||| || |||||||| || || ||||| || |||| |||| |||| || Sbjct 5891114 CACTAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTTCGACCGTCTTC 5891055 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 |||||||| || || | || || |||||||||||| || | |||||||||||| Sbjct 5891054 AAGCTGTTTCCCGGCGAATATCAGCCTCTGCTGATCCGGTGGGATGCCCTCTTTGTC 5890998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414563164680358