Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq42 91.5 1e-13 >seq42 Length=30274277 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATC-GTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||||| || ||||| || || | || || || |||| || | |||||||| ||||| Sbjct 11482497 TCTTTCTGTATATTGTAGTCAGCCAAAGTGCGGC-CATCCTCAAGCTGTTTTCCAGCAAA 11482439 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 |||| || || ||||| |||| | ||||| || || ||||||| ||||| | Sbjct 11482438 GATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATTTTTGCCTTGACATT 11482379 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| || |||| ||| || || | || ||||||||||| ||||| |||||||| Sbjct 11482378 GTCAATTGTGTCTGAGCTCTCAACTTCAAGAGTGATTGTTTTACCAGTTAAGGTCTTCAC 11482319 Query 44110 AAATATTTGCAT 44121 |||||| ||||| Sbjct 11482318 AAATATCTGCAT 11482307 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||| | | || | ||||| ||| |||||||||||| ||||||||| Sbjct 11334980 CCTCCTCTCAAACGAAGTACAAGGTGTAGGGTGGACTCTTTTTGAATGTTATAATCGGCC 11335039 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || | |||| || | || ||||| ||||| ||||||| ||||||||| | || Sbjct 11335040 AAAGTCCTACCATCCTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCAGGGGGG 11335099 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||| || || ||| |||||| || || | ||| ||||| | ||| || Sbjct 11335100 ATACCCTCCTTGTCTTGGATTTTTGCCTTAACATTGTCAATGGTATCAGAACTCTCAACT 11335159 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || | ||||| ||||| || ||||| Sbjct 11335160 TCAAGAGTTATGGTTTTTCCAGTAAGGGTCTTAACAAAGATCTGCAT 11335206 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTTTAATTGACGCTCATCGTCCAATTG 43977 || |||||| ||||| || || || || || | || || || |||| || | || Sbjct 11333864 TGCAGCGTGGATTCTTTCTGTATGTTGTAGTCAGCCAAAGTGCGGC-CATCCTCAAGCTG 11333922 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 |||||| ||||| |||| || || ||||| |||| | ||||| || || ||||| Sbjct 11333923 TTTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATTTT 11333982 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 | ||||| | ||| || |||| ||| || || | || ||||||||||| || Sbjct 11333983 TGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACTTCAAGAGTGATTGTTTTACCAGT 11334042 Query 44098 TAAAGTCTTCACAAATATTTGCAT 44121 ||| ||||||||||| || ||||| Sbjct 11334043 TAAGGTCTTCACAAAAATCTGCAT 11334066 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| || | | ||||| || || ||| |||||| || || |||||||| Sbjct 11334524 CCGCCTCTTAAACGGAGAACCAAGTGAAGGGTGGACTCTTTCTGGATGTTATAATCAGCC 11334583 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| || |||| || | || || || |||||||| | || |||||||| | || Sbjct 11334584 AATGTCCGGCCATCCTCGAGCTGCTTACCAGCAAATATAAGCCTCTGCTGGTCTGGGGGA 11334643 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||| || || || ||||| |||||| || ||| || |||| ||| || Sbjct 11334644 ATACCCTCCTTGTCCTGGATTTTCGCTTTGACATTATCAATGGTGTCTGAGCTCTCAACT 11334703 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || ||||| || || | ||||||||||| ||||||||| Sbjct 11334704 TCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCATG 11334751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354769354414236