Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_005069.1 Length=46339 Score E Sequences producing significant alignments: (Bits) Value seq1562 352 8e-93 >seq1562 Length=7100 Score = 352 bits (390), Expect = 8e-93 Identities = 1044/1594 (65%), Gaps = 47/1594 (3%) Strand=Plus/Minus Query 21703 GCAGTTTTAATACAGCGCATAATGATTTTCCGTGAGATATTCTCAGCTTCAGCTAATTTA 21762 || || || |||||||| |||| || || ||||| ||||| || || ||||| | | Sbjct 5871 GCGGTGTTGATACAGCGGGTAATAATCTTACGTGAAATATTTTCCGCATCAGCCAGCGCA 5812 Query 21763 CTTACATTCCCATCAAAATCATTATGCAGACGGCGTGAATAACGTTGGCCGCGCTCAAAT 21822 | ||| ||| |||| ||||| |||| |||| || |||||| || || || ||| | Sbjct 5811 GAAATATTTCCAGCAAATTCATTCTGCAATCGGCTTGCATAACGCTGACCACGTTCATAA 5752 Query 21823 GCTGATGTAGGTCGGTAATCGTTACCGATTTGCGACAGCCATGCCATTTGCTCTTCGTCT 21882 || ||| || || ||||||||||| | | || | ||||| ||||| || || Sbjct 5751 GCACTTGTTGGGCGATAATCGTTACCCAATCTGGATAATGCAGCCATCTGCTCATCATCC 5692 Query 21883 AAATCCCCGACAAGGACCCGATAATCTGTTTTTGTAATTATTGCAGTTTTGCGGCGGCGA 21942 | || || || || || |||||||| ||| |||| | |||| ||| || |||||| Sbjct 5691 AGCTCGCCAACCAGAACACGATAATCACTTTCGGTAAGTGCAGCAGCTTTACGACGGCGA 5632 Query 21943 CTGCCATCAGCTACTTCTATAACGCCGTTTACTTCGCGGCCATAGGCAGGGTTCTGCTGG 22002 || ||||| || | |||||| || || |||| || || | || || |||| || Sbjct 5631 CTCCCATCGGCAATTTCTATGACACCAGATACTCTTCGACCGAACGCCGGTGTCTGTTGA 5572 Query 22003 CCAGATAATTTGAATGAAGGGATCAGGTCATCTAATGCGGTTTCAGTTAGCAACTCTTGG 22062 |||| | | || |||||||| || ||||| | |||| ||||| |||| ||| ||| Sbjct 5571 CCAGTCAGTAGAAAAGAAGGGATGAGATCATCCAGTGCGTCCTCAGTAAGCAGCTCCTGG 5512 Query 22063 TCACGCTCATTCCCGCACCAAACCATTGTGGCCTTATTAACTCTTTCTGCTGGTATGGTT 22122 ||||| ||||| || |||| ||| | || ||| | ||| || || | | | | Sbjct 5511 TCACGTTCATTACCTGACCATACCCGAGAGGTCTTCTCAACACTATCACCCCGGAGCACT 5452 Query 22123 TTAAGAACAAAATGAACATCACGGCCACAGACAGAAAGGGTAATCTGATTACCG---GTC 22179 | |||| ||| | ||||| || ||||| |||| | ||||| ||||||| | | Sbjct 5451 TCAAGAGTAAACTTCACATCCCGACCACATACAGGCAAAGTAATGGCATTACCGCGAGCC 5392 Query 22180 ATTGCATTAACGCGAGATGTTAACTGTGAAACTGCT---GGAGCAGCTGGTTGCCGAGTT 22236 ||| | ||||| | ||||| ||| | | || ||||||||| | ||| | Sbjct 5391 ATTACTCCTACGCGCGCAATTAAC---GAATCCACCATCGGGGCAGCTGGT-GTCGA--T 5338 Query 22237 ACAGAGCCAGGCGCTGGGACCGTGGTCGCATTATTCATTTCG-ATTTTTGGGGCGTTCTT 22295 | || || || |||| || | | |||| | || || ||| || Sbjct 5337 AACGA---AGTATCTTCAACCG--GTTG-AGTATTGAG--CGTATGTTTTGGA------- 5293 Query 22296 CATTACTGGTGCACGTTTCATT-TCAAATTCTCCCAACGCGGCTTAATTAAGCGATTATA 22354 || || || ||||| |||||| || ||| |||||| || || ||||| | |||| | Sbjct 5292 -ATAACAGGCGCACGCTTCATTATCTAAT-CTCCCAGCGTGGTTTAATCAGACGATCGAA 5235 Query 22355 AATTTCTGCACAAACCGGCTCCCAGATAGCCACAGCATTGCGCCAGGCATTTGGAGTACT 22414 |||||| || || || ||||| |||| | |||||| | ||||||| | | | Sbjct 5234 AATTTCATTGCAGACAGGTTCCCAAATAGAAAGAGCATTTCTCCAGGCACCAGTTGAAGA 5175 Query 22415 ACGTTGGTTAGCGGCTTGTTCGAACACAGTTCGCATACGAACTTGTCCTTTACCTACTTC 22474 ||||| | | ||| ||||| || ||||||| ||| || | || |||||||| ||||| Sbjct 5174 GCGTTGATCAATGGCCTGTTCAAAAACAGTTCTCATCCGGATCTGACCTTTACCAACTTC 5115 Query 22475 GTCAGTTACTCGAACAACTTCTTTAAGGACCATGCTGCCCCAAGCATCACGTATATGGTC 22534 || ||| | || ||||| | ||| || |||||||| ||||| ||||| || || || || Sbjct 5114 ATCCGTTTCACGTACAACATTTTTTAGAACCATGCTTCCCCAGGCATCCCGAATTTGCTC 5055 Query 22535 ATCCATCCACTGAGATTGGCTACCAACAGCATTACTGAATTTAGTAATCAATACCCTAAC 22594 ||||||||| | || || ||| ||| ||| |||| |||| ||| | | || Sbjct 5054 CTCCATCCACGGGGACTGAGAGCCATTGCTATTGCTGTATTTGGTAAGCAAAATACGTAC 4995 Query 22595 ATCAGGCTCAAACCCGCCGAGGTCCAC--TCCAGCCATAAGATCACGCAACATAGTGAAA 22652 ||||||||| ||||| || || || || | | |||||||| | |||| |||| Sbjct 4994 ATCAGGCTCGAACCCTTTAAGATCAACGTTCTTG--AGCAGATCACGAAGCATATCGAAA 4937 Query 22653 AATTGCAATGTGCTGACATAGTCATAAAGTTCAGCTGGAGTTGGTACAACAATGACATCA 22712 || |||| || | | |||||| | | ||||| || || || |||| | |||||| Sbjct 4936 AACTGCAGTGCGGAGGTGTAGTCAAACAACTCAGCAGGCGTGGGAACAATCAGCACATCA 4877 Query 22713 GCGGCACAAACCACATTTATTGTGCCTATGCCCAAGTTAGGTGCACTGTCTAAAACAACT 22772 || ||||| || ||||| || ||||| || |||| |||||| || ||||| | ||| | Sbjct 4876 GCAGCACATACGACATTAATCGTGCCGATACCCAGGTTAGGCGCGCTGTCAATAACTATG 4817 Query 22773 ACGTCATAGCTGTCCCATACGGACTCGATTGCAGCACGTAGCATCATGTGCGGTGCTACA 22832 || |||||| | || | || || || || ||||||| ||| || | Sbjct 4816 ACATCATAGTCATGAGCAACAGTTTCAATGGCCAGTCGGAGCATCAGGTGTGGATCGGTG 4757 Query 22833 GGGAGCTTTTCGGCATCA----TGCAAAGGATATAATTCAGACTCAATTCGATGGATGGC 22888 || || || | ||||| ||| | ||| |||| ||||| || || | || Sbjct 4756 GGCAGTTTACCTTCATCAAATTTGCCCA----TTAACTCAGTTTCAATACGGTGCAGAGC 4701 Query 22889 CAGACAGGATGGGATTATGTCCAGATTTGGCCAACATGTTGGTTTGATGGCGTACATAGC 22948 ||||||||| || || ||||| || ||||| || || || || || || || | | Sbjct 4700 CAGACAGGAAGGAATAATGTCAAGCCCCGGCCAGCAAGTGGGCTTTATTGCATAAGTGAC 4641 Query 22949 ATCATCACGTTCACCTAAGTAATAAGGGAGTAGAGTTTCGTCTTCGTGGATATGCAAATC 23008 ||| || ||| || | || |||| || ||||| || ||| | || ||||| | ||| Sbjct 4640 ATCGTCCTTTTCCCCAAGATAGAAAGGCAGGAGAGTGTCTTCTGCATGAATATGAAGATC 4581 Query 23009 AGGTACATACCCATGATAAAGGCTGGCGGTAGCTTGCGGATCTGTAGCATCAATCAATAG 23068 ||||| | || ||||| | ||| || | || || || || | || | | | Sbjct 4580 TGGTACCCATCCGTGATACATTGAGGCTGTTCCCTGGGGGTCGTTACCTTCCACGAGCAA 4521 Query 23069 TACGCGTAAGCCCTGCAATGCTAACCATTGAGCTGTATGCACTGAGGTACT--TGTTTTG 23126 || |||| |||| || || | ||||| ||| || || ||| |||||| Sbjct 4520 AACACGTAGCCCCTTCAGAGCCAGATCCTGAGCAAGATGAAC--AGAAACTGAGGTTTTG 4463 Query 23127 TATGCGCCACCTTTATGTGCCGCTATAGCCAATACTACTGGGTCTTGCCCATCAGGTCGT 23186 || ||||||||||||| || || | | | || ||| | | |||| ||| Sbjct 4462 TAAACGCCACCTTTATGGGCAGCAACCCCGATCACCGGTGGAAATACGTCTTCAGCACGT 4403 Query 23187 TTCCAGCGTGTACCAAAATGATCCCGAAGGTCGTTAATTTGTTGAATCGTATATCCCGCT 23246 | | || |||||||| ||| || | | |||||||||| ||| ||||| || | Sbjct 4402 CGCAATCGCGTACCAAACACATCACGCATATGATTAATTTGTTCAATTGTATAACCAACA 4343 Query 23247 CTTTGTGGCACTCTGCCACGTGTAACCATATCCG 23280 | ||| || | || || || ||||||||| Sbjct 4342 CGTTGCTCAACCCGTCCTCGAATATCCATATCCG 4309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148159844751734