Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq57 114 1e-20 seq42 93.3 4e-14 seq23 87.8 2e-12 >seq57 Length=24021853 Score = 114 bits (126), Expect = 1e-20 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | ||| || || || || |||||| ||||||||||||||||| Sbjct 5917017 ACCACCGCGCAGACGAAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGC 5916958 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | |||| | ||||| |||||||| ||| || |||| | | |||||| || || Sbjct 5916957 AAGAGTTCGCCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGTGG 5916898 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCG 48677 | | |||||||||| ||| ||| |||| | | | ||||| |||| || | || Sbjct 5916897 AATCCCTTCCTTGTCCTGAATCTTC-GCTTTCACGTTGTCAATGGTGTCGG-AGCTTTCG 5916840 Query 48678 -TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || ||||| || |||||||| ||||||||||||||||||||| Sbjct 5916839 ACCTCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAAATCTGCATC 5916789 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || || ||| ||||||||||||||||| || | ||| |||| || Sbjct 5916771 CACCAAGTGCAGAGTTGACTCTTTTTGAATGTTGTAATCGGCGAGGGTTCGGCCGTCTTC 5916712 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| || |||| | | |||||| || || | | ||||| ||| Sbjct 5916711 CAGCTGCTTTCCGGCGAAAATCAGCCTCTGCTGGTCTGGTGGAATGCCCTCCTTATCCTG 5916652 Query 48637 AATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || ||| |||| | | | ||||| |||| ||| ||| | || ||||| | Sbjct 5916651 GATCTTC-GCTTTCACGTTGTCAATGGTGTCGGAGCTCTCGACCTCCAGGGTGATGGTCT 5916593 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | |||||||| ||||| ||||||||||||||| Sbjct 5916592 TTCCGGTGAGGGTTTTTACAAAAATCTGCATC 5916561 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| |||||| || |||||||| || |||| | | | || |||||||| Sbjct 5892020 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTG 5891961 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || || | |||||||||| || | | |||||||||| ||| || Sbjct 5891960 CTTCCCAGCGAAGATCAATCTCTGCTGATCCGGTGGGATCCCTTCCTTGTCCTGAATCTT 5891901 Query 48643 CTGC-TTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| || | | | ||||| |||| | |||| ||| | || ||||| || || | Sbjct 5891900 -TGCTTTCACATTATCAATGGTGTCGGAACTCTCCACCTCCAGCGTGATGGTCTTCCCAG 5891842 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| ||||| || || ||||| Sbjct 5891841 TCAGAGTCTTCACGAAGATTTGCAT 5891817 >seq42 Length=30274277 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || || ||||| ||| |||||| |||||||||||||||| ||| ||| || | ||||| Sbjct 11520497 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAG-CAAGTGTCCGACCATCCTC 11520439 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| || | | || | | ||||||||| || | | ||||||||| Sbjct 11520438 CAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGATCTGGAGGGATCCCCTCCTTGTCCTG 11520379 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 |||||| ||| | | ||||||| || | |||| ||| | ||| || || || Sbjct 11520378 AATTTTGGCCTTCACATTATCTATGGTGTCTGAGCTCTCCACCTCTAGTGTGATCGTCTT 11520319 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || |||||||| |||||||| Sbjct 11520318 TCCCGTCAGGGTCTTCACAAATATCTGCAT 11520289 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||||||| ||| || || ||||| |||||||||||| || | ||||| Sbjct 11481831 ACCAAGTGAAGTGTGGACTCTTTCTGGATGTTATAATCAGCCAATGTCCGGCCATCCTCA 11481772 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||||||||| | |||| | | |||||| || || | | ||||||||| Sbjct 11481771 AGCTGCTTACCTGCAAAAATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 11481712 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 |||||| || | | | ||||| || | | ||| || | || ||||| ||| Sbjct 11481711 ATTTTCGCTTTAACATTATCGATGGTGTCTGAACTCTCAACTTCAAGGGTAATGGTCTTA 11481652 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||||||||| ||||| Sbjct 11481651 CCAGTAAGGGTCTTCACAAAAATTTGCAT 11481623 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||||||||| ||||| ||||| |||||||| |||| ||| | ||||| ||||| Sbjct 11482738 ATGAAGTGTAGATTCCTTCTGAATATTGTAATCTACCAAGGTCCGCCCATCCTCTAGCTG 11482679 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | | ||||||||| || | | |||||||| ||| || Sbjct 11482678 CTTTCCAGCAAAGATGAGCCTCTGCTGATCTGGAGGGATGCCCTCCTTGTCTTGAATCTT 11482619 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | ||||||| || | |||| ||| | ||| || |||||||| || Sbjct 11482618 TGCCTTCACATTATCTATGGTGTCAGAGCTCTCCACCTCTAGTGTGATCGTTTTACCTGT 11482559 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||||||||||||||| Sbjct 11482558 CAGGGTCTTCACAAAAATCTGCAT 11482535 >seq23 Length=22385789 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/201 (70%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | ||| ||||||||||||| || || || | Sbjct 4579852 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCCAGCTGTTTTCCAGCGAA 4579793 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTG--ATA 48652 || | ||||||||| ||| || | | |||||||||| || || |||| || Sbjct 4579792 GATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGGCATT 4579733 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| || | || || ||| | |||||||| || || || || |||||| Sbjct 4579732 GTCG--ATGGTGTCAGACGATTCAACCTCTAAGGTTATGGTCTTCCCCGTTAGGGTTTTC 4579675 Query 48713 ACAAAAATCTGCATCGTGTCT 48733 || || ||||||||| || || Sbjct 4579674 ACGAAGATCTGCATCTTGGCT 4579654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421241409463907