Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_005857.1 Length=51601 Score E Sequences producing significant alignments: (Bits) Value seq1562 369 1e-97 >seq1562 Length=7100 Score = 369 bits (408), Expect = 1e-97 Identities = 693/1011 (69%), Gaps = 12/1011 (1%) Strand=Plus/Minus Query 27456 GCTTCATTAT-TACTCCTCCCAACGTGGCTTAATCAAATCATCAAAAATTTCCTGGCAAA 27514 |||||||||| || || ||||| ||||| ||||||| | ||| |||||||| | ||| | Sbjct 5279 GCTTCATTATCTAATC-TCCCAGCGTGGTTTAATCAGACGATCGAAAATTTCATTGCAGA 5221 Query 27515 CAGGCTCCCAAATAGAAACTGCATTTCGCCAGGCGTTAAGTGTTGAGCGCTGATAAGCAG 27574 |||| ||||||||||||| ||||||| |||||| | || ||||| |||| | | Sbjct 5220 CAGGTTCCCAAATAGAAAGAGCATTTCTCCAGGCACCAGTTGAAGAGCGTTGATCAATGG 5161 Query 27575 CCTGCTCAAATACCGTACGCATTTTTATTTGGCCCTTTCCTACTTCATCTGTCACCCTGA 27634 |||| ||||| || || | ||| || || || || || |||||||| || | | | Sbjct 5160 CCTGTTCAAAAACAGTTCTCATCCGGATCTGACCTTTACCAACTTCATCCGTTTCACGTA 5101 Query 27635 CAACTTGACGCAGAACCATCGACCCCCACGTATTTCTTATCTGCTCTTCCATCCAGCGCG 27694 |||| | |||||||| ||||| | || | || ||||| |||||||| | | Sbjct 5100 CAACATTTTTTAGAACCATGCTTCCCCAGGCATCCCGAATTTGCTCCTCCATCCACGGGG 5041 Query 27695 ACTGATTACCAGTAGTCAGGCTGTATTTGGTTAGCAGCAGTCGTACCACCGGCTCGAAAC 27754 ||||| ||| | | |||||||||||| |||| | ||||| | |||||||| | Sbjct 5040 ACTGAGAGCCATTGCTATTGCTGTATTTGGTAAGCAAAATACGTACATCAGGCTCGAACC 4981 Query 27755 CGCCTAAATCAACGGTTTTTAGTAGGTCCAGAAGCATGGTGAAGAACTGCAGAACGGATG 27814 | | ||||||| | || || || || ||||||| ||| |||||||| |||| | Sbjct 4980 CTTTAAGATCAACGTTCTTGAGCAGATCACGAAGCATATCGAAAAACTGCAGTGCGGAGG 4921 Query 27815 AATAATCAAATAGCTCTGCAGGGGTAGCTACGACAATAATATCGGCAGCACAAACAACAT 27874 || ||||| | ||| ||||| || | || | | | ||| |||||||| || |||| Sbjct 4920 TGTAGTCAAACAACTCAGCAGGCGTGGGAACAATCAGCACATCAGCAGCACATACGACAT 4861 Query 27875 TAATCGTCCCTGTTCCGAGGTTAGGAGCGCTATCAATAACGATAATGTCATAGTTATCCC 27934 ||||||| || | || |||||||| ||||| |||||||| || | ||||||| || Sbjct 4860 TAATCGTGCCGATACCCAGGTTAGGCGCGCTGTCAATAACTATGACATCATAGTCATGAG 4801 Query 27935 ATACGGATTCTATAGCAGCCCGTAGCATCAGGTGAGG--CGGATGAGGTAGTTTTCCTTG 27992 || | ||| || || || ||||||||||| || ||| || || ||||| |||| Sbjct 4800 CAACAGTTTCAATGGCCAGTCGGAGCATCAGGTGTGGATCGG-TG-GGCAGTTTACCTT- 4744 Query 27993 GGCGTGGTATT---GCATCAGGTCCGTTTCGATACGGTGAAGCGCCAAGCAGCTGGGGAT 28049 | | ||| ||| | || ||||| |||||||| || |||| ||| || || Sbjct 4743 --CATCAAATTTGCCCATTAACTCAGTTTCAATACGGTGCAGAGCCAGACAGGAAGGAAT 4686 Query 28050 AATGTCCAGACCTGGCCAGCAGGTCGGCTTTATAGCGTATTCCGCATTATCACGCTCACC 28109 |||||| || || |||||||| || |||||||| || || ||| || || || Sbjct 4685 AATGTCAAGCCCCGGCCAGCAAGTGGGCTTTATTGCATAAGTGACATCGTCCTTTTCCCC 4626 Query 28110 AAGGTAAAACGGGAGCAAAGTATCATCGGCGTGAATGTGCAAATCAGGCACATAGCCATG 28169 ||| || || || || | ||| || || || ||||| || | ||| || || | || || Sbjct 4625 AAGATAGAAAGGCAGGAGAGTGTCTTCTGCATGAATATGAAGATCTGGTACCCATCCGTG 4566 Query 28170 ATACATAGAGGCGGTTCCCTGCGGATCATTACCTTCAATGAGTAGAACTCGGTGACCCTG 28229 |||||| ||||| |||||||| || || |||||||| | ||| | ||| || | |||| Sbjct 4565 ATACATTGAGGCTGTTCCCTGGGGGTCGTTACCTTCCACGAGCAAAACACGTAGCCCCTT 4506 Query 28230 TAAGGCTAACCATTGAGCTTCATGTACTGCAGATGAGGTTTTATAAACGCCACCTTTGTG 28289 | || | ||||| ||| || | | ||||||||| |||||||||||||| || Sbjct 4505 CAGAGCCAGATCCTGAGCAAGATGAACAGAAACTGAGGTTTTGTAAACGCCACCTTTATG 4446 Query 28290 TGACATAACAGCTAAAACGGCTGGATTTTTATCGGCTGGCCGTTGATTAGGATTACCGAA 28349 | ||| | | || | |||| | || | | ||| | | |||| || Sbjct 4445 GGCAGCAACCCCGATCACCGGTGGAAATACGTCTTCAGCACGTCGCAATCGCGTACCAAA 4386 Query 28350 AATGTTCCGCATATGGCTAATTTGGTCGATGGTATAGCCAGCACGACGTTCGACGCGGCC 28409 | | |||||||| ||||||| || || ||||| ||| |||| | || || || || Sbjct 4385 CACATCACGCATATGATTAATTTGTTCAATTGTATAACCAACACGTTGCTCAACCCGTCC 4326 Query 28410 ACGCAATTCAAAATCAGGTGGCGGTAACCGCCCATTCTTCTCAGCATCTCT 28460 || | || | ||| || |||||| ||||| ||||| |||||||| Sbjct 4325 TCGAATATCCATATCCGGGTGCGGTAGTCGCCCTGCTTTCTCGGCATCTCT 4275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164997863435642