Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1 116 2e-21 seq35 107 1e-18 seq24 107 1e-18 seq23 107 1e-18 seq4 107 1e-18 seq1545 105 3e-18 seq1097 105 3e-18 seq49 105 3e-18 seq37 105 3e-18 seq6 95.1 6e-15 >seq1 Length=23037639 Score = 116 bits (128), Expect = 2e-21 Identities = 80/90 (89%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATC-AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || |||||||| ||| ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 214238 AAAAAAAAATCCAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 214179 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||||||||| |||| Sbjct 214178 CGACGCTCTAACCAACTGAGCTAATAGGCC 214149 >seq35 Length=22702307 Score = 107 bits (118), Expect = 1e-18 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||| || |||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 5419618 ATAAAATATATTTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 5419677 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||||||||||||||| |||| Sbjct 5419678 ACGCTCTAACCAACTGAGCTAATAGGCC 5419705 >seq24 Length=23006712 Score = 107 bits (118), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 3034111 AAAAA--AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 3034168 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 3034169 CTCTAACCAACTGAGCTAATAGGCC 3034193 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 3034280 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3034339 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 3034340 TGAGCTAATAGGCC 3034353 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| |||| ||| ||||||||||||| ||| ||||||||| |||||||||| |||||| Sbjct 16593452 TGGCACATGCAAGTCTCGAACCTTCGACATTCACGTTATTAGTACGACGCTCTAACCAAC 16593511 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 16593512 TGAGCTAATAGGCC 16593525 Score = 89.7 bits (98), Expect = 3e-13 Identities = 83/104 (80%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 11430 AATATAGAATTAATAAAAAAT-CAAATT---GGCCCATGAAAGGATCGAACCTTCGACCT 11485 ||||||||||| | ||| || |||||| |||||||| | | || ||||| | |||| Sbjct 16530230 AATATAGAATTGAAAAATGATTCAAATTTATGGCCCATGCAGGTCTCAAACCTGCCACCT 16530289 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| ||| |||||| || ||||| ||||||||||||||| |||| Sbjct 16530290 TCGTGTTGTTAGCATGATGCTCTAACCAACTGAGCTAATAGGCC 16530333 >seq23 Length=22385789 Score = 107 bits (118), Expect = 1e-18 Identities = 74/83 (89%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 11448 AATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 ||| ||||| |||||||| | | |||||||| ||||||||||||||||||||||||||| Sbjct 8902778 AATAAAATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCT 8902719 Query 11507 CTRACCAACTGAGCTAATGGGCC 11529 || ||||||||||||||| |||| Sbjct 8902718 CTAACCAACTGAGCTAATAGGCC 8902696 >seq4 Length=19341862 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 5212393 AACTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 5212334 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 5212333 CAACTGAGCTAATAGGCC 5212316 >seq1545 Length=5101 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 3230 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 3171 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 3170 CTGAGCTAATAGGCC 3156 >seq1097 Length=5697 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 3311 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 3252 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 3251 CTGAGCTAATAGGCC 3237 >seq49 Length=17126926 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 5310719 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 5310778 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 5310779 CTGAGCTAATAGGCC 5310793 >seq37 Length=24396255 Score = 105 bits (116), Expect = 3e-18 Identities = 77/89 (87%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| || || |||||||| | | |||||||| ||||||||||||||||||||| Sbjct 1809246 AATAAAATATATCAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 1809188 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 1809187 GACGCTCTAACCAACTGAGCTAATAGGCC 1809159 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 817906 TGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 817847 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 817846 TGAGCTAATAGGCC 817833 >seq6 Length=23867706 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||||| Sbjct 20242961 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 20243020 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 20243021 TGAGCTAATAGGCC 20243034 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261485122535932