Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq37 138 2e-28 seq11 131 3e-26 seq23 100 4e-17 >seq37 Length=24396255 Score = 138 bits (152), Expect = 2e-28 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | ||| || |||||||| || || ||||| ||||| || ||| Sbjct 2659769 GCAAAGCGTCATCGGAAAGTTCTCCGTGATAACATTCAGGGCATCACGAAGCCGGCGATC 2659710 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||| | | ||||| || ||| | || ||| ||| |||| || |||| Sbjct 2659709 CGGCGTCTGGCTAGAAGAGGTGGGGTGAAGAGAATCAGTGGGTTGATCTACGAGGAGACC 2659650 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| ||||||||||| | ||| ||| |||| ||||||| | || || ||| Sbjct 2659649 AGAGGCGTTCTGAAGATCTTCTTGGAGAACGTCATCCGTGATGCTGTGACTTACACTGAG 2659590 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||||||| || ||||| || ||| |||||||| | || || || Sbjct 2659589 CACGCTAGGCGGAAGACGGTGACCGCCATGGATGTGGTTTACGC 2659546 Score = 134 bits (148), Expect = 2e-27 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | ||| || |||||||| || |||||||| ||||| |||||| Sbjct 2656526 GCGAAGCGTCATCGGAAAGTTCTCCGTGATAACATTCAGGGAATCACTAAGCCGGCTATC 2656467 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | |||||||| ||| | || || ||| |||| || |||| Sbjct 2656466 CGGCGTCTTGCGAGAAGAGGTGGAGTGAAGAGAATCAGCGGGTTGATCTACGAGGAGACC 2656407 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||||||||||||||| | ||| |||||| | |||||| | || || ||| Sbjct 2656406 AGAGGCGTTTTGAAGATCTTCTTGGAGAACGTTATTCGCGATGCTGTGACGTACACTGAG 2656347 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||||| | || ||||| || ||| |||||||| | || || || Sbjct 2656346 CACGCCAGGCGGAAGACGGTGACCGCCATGGATGTTGTTTACGC 2656303 Score = 107 bits (118), Expect = 3e-19 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||||||| || || || || ||||||||||| || ||||||||||| || || Sbjct 2041002 GCCAAGCGTCATCGCAAGGTC-CTCCGTGATAACATCCAGGGCATCACCAAGCCTGCCAT 2041060 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | |||||||| | | || || || |||||| || || || |||| ||||| | Sbjct 2041061 CAGGCGTCTGGCCAGAAGAGGAGGCGTGAAGCGTATCAGCGGTCTGATCTACGAAGAAAC 2041120 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || | ||||||||||| ||| ||||||| || ||| | ||| || || Sbjct 2041121 CAGAGGGGTGCTCAAGATCTTCCTTGAGAACGTTATCAGAGACGCTGTGACCTACACTGA 2041180 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 ||||||| || ||||| || || | ||||| Sbjct 2041181 GCACGCTCGTCGCAAGACCGTGACGGCTATGGA 2041213 >seq11 Length=21508407 Score = 131 bits (144), Expect = 3e-26 Identities = 189/267 (71%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | || || ||||||||||| || ||||| |||||||| || Sbjct 4827012 GCAAAGCGACATCGTAAGGTGCTCCGTGATAACATCCAGGGTATCACGAAGCCAGCCATA 4827071 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||| | |||||| | | || || || |||||| || || || ||||||| |||| Sbjct 4827072 CGTAGGCTGGCTAGGAGAGGAGGTGTGAAGCGTATCAGCGGTCTGATCTATGAGGAGACC 4827131 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||||||||| | ||| ||| || | || || || ||| || ||| Sbjct 4827132 CGTGGTGTGCTGAAGATCTTCTTGGAGAACGTCATTCGGGACGCCGTCACCTACACGGAG 4827191 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| || || ||||||| |||||||||| | || | || ||| Sbjct 4827192 CACGCTCGCCGGAAGACCGTGACTGCCATGGACGTCGTCTATGCTCTCAAGAGGCAGGGC 4827251 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | ||||| ||||| ||||| Sbjct 4827252 AGGACTCTGTATGGGTTTGGTGGTTAA 4827278 Score = 105 bits (116), Expect = 1e-18 Identities = 169/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| || || ||||||||||| || || || || || ||| | | ||||| | Sbjct 5352285 GAGATAACATTCAGGGTATCACCAAGCCTGCCATTCGCCGGCTTGCTAGAAGAGGTGGTG 5352226 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | || ||| || ||||||| || | | | ||| | ||||||||||| Sbjct 5352225 TGAAGAGGATCAGTGGGCTGATCTATGAGGAAACCAGAGGGGTTCTTAAGATCTTCCTTG 5352166 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | |||||| | ||| || || || || | | | ||||| |||||| Sbjct 5352165 AGAATGTGATTCGCGATGCTGTGACCTACACTGAACATGCGAGAAGGAAGACGGTCACCG 5352106 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || ||||| | || | || || | | ||||||| ||||| ||| Sbjct 5352105 CCATGGATGTGGTTTATGCTCTCAAGAGGCAGGGAAGGACTCTTTATGGATTTGGCGGTT 5352046 Query 16698 AAT 16700 ||| Sbjct 5352045 AAT 5352043 >seq23 Length=22385789 Score = 100 bits (110), Expect = 4e-17 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||| || || ||||||||||| ||||| |||||| |||| | | || Sbjct 14426931 CTCCGGGATAACATTCAGGGTATCACCAAGCCTGCTATTCGTCGTTTGGCGAGGAGAGGA 14426872 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||| | || || | | ||||| |||| | | ||| | ||||| ||| Sbjct 14426871 GGCGTGAAGAGGATCAGCGGTCTCATTTATGAGGAGACCAGAGGCGTTCTCAAGATTTTC 14426812 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| || | |||||| | ||| || |||||||| | | | |||||||| Sbjct 14426811 CTCGAGAACGTGATTCGCGATGCTGTGACCTACACTGAGCACGCCAGAAGGAAGACTGTG 14426752 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||| | |||||| | || ||||| Sbjct 14426751 ACCGCTATGGATGTTGTTTATGC 14426729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073456416551