Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq42 185 1e-41 seq12 89.7 6e-13 >seq42 Length=30274277 Score = 185 bits (204), Expect = 1e-41 Identities = 423/626 (68%), Gaps = 22/626 (4%) Strand=Plus/Plus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 ||| || ||||| |||||||| | |||||||||| |||| || || || || || Sbjct 25646940 CAAGCACGCGAAGTCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGT 25646999 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 | ||| ||||| || || || || || ||||| ||||| || ||| ||| || || Sbjct 25647000 TAATCCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAA 25647059 Query 33420 GAAGATTCCTTCTACTGCAG-CAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGT 33475 |||||| ||||| || |||| | || || | || | || || | ||| || || Sbjct 25647060 GAAGATGCCTTCCAC-GCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGT 25647118 Query 33476 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33535 | ||||| ||||||| | ||| ||||| |||||| || || || || || | Sbjct 25647119 CG---ATCCATCGGAGAGCCCACTGGGCTTTCTTCGCTACACAGGGGATGGTATCGATTG 25647175 Query 33536 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33595 | | |||||| |||||| || || ||| || | ||| | || | ||| ||||| | Sbjct 25647176 CGTGAAAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGT 25647235 Query 33596 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655 |||| || || || |||||||||||||| ||||||||||| ||||| | |||||||| Sbjct 25647236 ACATCTCGGAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGG 25647295 Query 33656 TAATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTG 33714 | ||| || || | || | | |||| || | ||||| || ||||||||| Sbjct 25647296 CGACCTGGACCTC-CTTCATGAACCTTCCGGCGAGGTTTTCGAGGACGATTCCGTCAGAA 25647354 Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CTGGTGTTAGTTTAT 33772 || || || || || | | ||| | || || | || |||| |||||| || || | Sbjct 25647355 GCGGCGAAGAAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTG--AGGTT-T 25647411 Query 33773 TCCAATCATTGA----TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 33828 ||| |||||| || | ||| | || ||||| || |||||||||| || ||| Sbjct 25647412 TCC---CATTGACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCTGTCCAAAACGACGCC 25647468 Query 33829 TCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTA 33888 || ||||| || ||||| | ||||| ||| || || || ||||| ||| || | | Sbjct 25647469 TCGGCCTTCTTGTACATTTCCCAGACTTCAGGGTACTGAATCGGGAACATACAGAACCGA 25647528 Query 33889 TTTGGATTTGGTGCAAGGATGGGTTC 33914 | ||| || || || || | ||| || Sbjct 25647529 TCTGGGTTAGGAGCGAGCAAGGGCTC 25647554 >seq12 Length=21026613 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| ||||| || | || || ||||| || || ||||| | ||| | || || | Sbjct 18118193 GTTCCTGCATTGAAAAGAGTGGGTGAAGCATGAGTGAACCAACGCTGAGACATTAAATGG 18118252 Query 63672 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || | ||||| || || || || | ||| |||||||| || | || | ||| || Sbjct 18118253 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGAAACTCTCATCAA 18118311 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||||||||| ||||| || | ||| | || |||| | |||||| | || | Sbjct 18118312 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGAATCTTCAGGAGGTAGGACCTCTCAAG 18118371 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||| |||||||| || | || |||||| || || ||||| || Sbjct 18118372 GGTTTTGAAACCAAAGTAATCATAATCAAAGTCCCGGTCATAAATGAT 18118419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622932350496120