Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4 109 1e-18 seq51 100 7e-16 seq12 95.1 3e-14 >seq4 Length=19341862 Score = 109 bits (120), Expect = 1e-18 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| |||||| | | ||| | | |||||||||||||| |||||||||||||| || Sbjct 3298246 CAGTTCTATGTAAGCCATGGGGAGTTATCATGCCAAATGTACCAGCGATCTGCTGACATG 3298305 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||||||||| |||||||| |||||| ||| || || | || ||| | ||||||||| Sbjct 3298306 GGTCTTGGTGTGCCGTTTAACATTGCATCTTATGCGCTCTTAACATGCATGATCGCTCAT 3298365 Query 111822 TTT 111824 || Sbjct 3298366 GTT 3298368 >seq51 Length=29360087 Score = 100 bits (110), Expect = 7e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 |||||||||||| | | ||| ||| || || |||||||||||||| ||||||||||| Sbjct 11026846 CAGTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGCTCTGCTGATATG 11026787 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||||||||| || ||||| ||||| ||| || || | || ||| | || |||||| Sbjct 11026786 GGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGACATGCATGATTGCTCAT 11026727 Query 111822 TTT 111824 || Sbjct 11026726 GTT 11026724 >seq12 Length=21026613 Score = 95.1 bits (104), Expect = 3e-14 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| || || || || | |||||| || ||| | |||||| |||| | Sbjct 18117980 ATGAAAGATGATAGTATTGAAGGAATATATGACACTCTAAAGGAGTGTGCTGTTATCAGC 18117921 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG-CACAGAACAGTTACAT 363740 ||| ||| || ||||||||||| || | || || |||||| ||||| | ||||| || Sbjct 18117920 AAGTCTGCTGGAGGAATTGGTGTTTCTGTTCATAACATTCGTGCCACAGGA-AGTTATAT 18117862 Query 363741 TCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 ||| || || | |||| | || ||||| | ||||| ||||| || ||||| | | | Sbjct 18117861 TCGTGGAACAAATGGGACA-TCCAATGGCATTGTTCCTATGCTACGGGTGTTCAATGACA 18117803 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||| | || || || || || ||||| ||| | || || Sbjct 18117802 CTGCCCGTTATGTTGATCAAGGAGGAGGCAAGAGGAAGGG 18117763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303321754591274