Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq42 113 4e-20 seq57 98.7 8e-16 >seq42 Length=30274277 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| || || ||||| ||||| ||||| ||| | ||| ||| | Sbjct 11327637 AATGCAAATATTTGTTAAGACACTCACTGGAAAGACCATCACCCTTGAAGTTGAGAGCTC 11327578 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 || || ||| |||| ||||| ||||| || || ||||| ||||| ||||| Sbjct 11327577 TGATACGATTG-ACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGATC 11327519 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 ||||||| | |||| ||| || || || | || |||| || || |||||||||||| Sbjct 11327518 AGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCCGATTATA 11327459 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||| |||||||| || | || |||| | | ||| |||| |||| Sbjct 11327458 ACATTCAGAAAGAGTCCACACTCCACCTGGTCCTCCGTTTGAGAGGTGGAA 11327408 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| || || ||||| ||||| ||||| ||| | ||| ||| | Sbjct 11519604 AATGCAAATATTTGTTAAGACACTCACTGGAAAGACCATCACCCTTGAAGTTGAGAGCTC 11519663 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 || || ||| |||| ||||| ||||| || || ||||| ||||| ||||| Sbjct 11519664 TGATACGATTG-ACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGATC 11519722 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 ||||||| | |||| ||| || || || | || |||| || || |||||||||||| Sbjct 11519723 AGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCCGATTATA 11519782 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||| |||||||| || | || |||| | | ||| |||| |||| Sbjct 11519783 ACATTCAGAAAGAGTCCACACTCCACCTGGTCCTCCGTTTGAGAGGTGGAA 11519833 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAA--ACGGAGTCC 115342 ||||||||| ||||| || || ||||| ||||||||||| ||| | ||| | |||| | Sbjct 11519832 AATGCAAATCTTTGTTAAGACACTCACTGGAAAAACCATCACCCTTGAAGTAGAGAGTTC 11519891 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 ||||| | | ||||| ||||| |||||| || || || || ||||| || Sbjct 11519892 --TGACAC-GATTGACAATGTAAAGGCAAAAATCCAAGACAAGGAGGGAATCCCCCCAGA 11519948 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||||| || || || | ||| || ||||| | || |||| ||| |||| ||||| Sbjct 11519949 CCAGCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGGACCTTGGCAGATTA 11520008 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGT 115494 |||||||| |||||||| || | ||| |||| Sbjct 11520009 CAACATTCAGAAAGAGTCCACCCTTCATTTGGT 11520041 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAA--ACGGAGTCC 115342 ||||||||| ||||| || || ||||| ||||||||||| ||| | ||| | |||| | Sbjct 11327409 AATGCAAATCTTTGTTAAGACACTCACTGGAAAAACCATCACCCTTGAAGTAGAGAGTTC 11327350 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 ||||| || ||||| ||||| ||||| || || || || ||||| || Sbjct 11327349 --TGACACAATT-GACAATGTAAAGGCGAAAATCCAAGACAAGGAGGGAATCCCCCCAGA 11327293 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||||| || || || | ||| || ||||| | || |||| ||| |||| ||||| Sbjct 11327292 CCAGCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGGACCTTGGCAGATTA 11327233 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGT 115494 |||||||| |||||||| || | ||| |||| Sbjct 11327232 CAACATTCAGAAAGAGTCCACCCTTCATCTGGT 11327200 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || || || ||||||||||| || | ||| ||| Sbjct 11335206 ATGCAGATCTTTGTTAAGACCCTTACTGGAAAAACCATAACTCTTGAAGTTGAGAGTTCT 11335147 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| |||| || || |||||| || || || || ||||| ||| || Sbjct 11335146 GATACCATTG-ACAATGTTAAGGCAAAAATCCAAGACAAGGAGGGTATCCCCCCTGACCA 11335088 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| | |||| ||| || || || | || |||| | || ||||||||||||| Sbjct 11335087 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAGGATGGTAGGACTTTGGCCGATTATAA 11335028 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||||||||||| || |||| | || | | ||| ||||||||| Sbjct 11335027 CATTCAAAAAGAGTCCACCCTACACCTTGTACTTCGTTTGAGAGGAGGAA 11334978 >seq57 Length=24021853 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| ||||| ||||| ||||| ||||| ||| | || ||| | | Sbjct 5916562 ATGCAGATTTTTGTAAAAACCCTCACCGGAAAGACCATCACCCTGGAGGTCGAGAGCTCC 5916621 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || ||| || || ||||| || ||| | || || || Sbjct 5916622 GACACCATTG-ACAACGTGAAAGCGAAGATCCAGGATAAGGAGGGCATTCCACCAGACCA 5916680 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || |||| || || || || | ||||| | | |||| | |||||||| || Sbjct 5916681 GCAGAGGCTGATTTTCGCCGGAAAGCAGCTGGAAGACGGCCGAACCCTCGCCGATTACAA 5916740 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||||||||||||| ||| | || ||||| Sbjct 5916741 CATTCAAAAAGAGTCAACTCTGCACTTGGTG 5916771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425334114340840