Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq57 122 7e-23 seq42 96.9 3e-15 seq12 84.2 2e-11 >seq57 Length=24021853 Score = 122 bits (134), Expect = 7e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| || || | || |||| ||||| || ||||| ||||| |||||||| ||||| Sbjct 5916789 CCCTCCACGAAGACGGAGCACCAAGTGCAGAGTTGACTCTTTTTGAATGTTGTAATCGGC 5916730 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | |||| | |||| |||| || || || || |||| |||| ||| ||||| || Sbjct 5916729 GAGGGTTCGGCCGTCTTCCAGCTGCTTTCCGGCGAAAATCAGCCTCTGCTGGTCTGGTGG 5916670 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| || || || || ||| ||||| | | | | |||||| | ||| Sbjct 5916669 AATGCCCTCCTTATCCTGGATCTTCGCT--TTCACGTTGTCAATGGTGTCGGAGCTCTCG 5916612 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| |||||||| || ||||| |||||||||||||| Sbjct 5916611 ACCTCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTTACAAAAATCTGCAT 5916562 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| |||||||| ||||| || || ||||||||||| || Sbjct 5891587 CCTCCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCTTTCTGGATGTTGTAGTCAGCG 5891528 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | | || |||| || || || || | || |||| ||| |||||| || Sbjct 5891527 AGGGTTCGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTCCGGTGGA 5891468 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || |||||| | | | | |||||| | || Sbjct 5891467 ATGCCCTCCTTGTCCTGGATCTTAGC--CTTCACGTTGTCAATGGTGTCGGAGCTTTCGA 5891410 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| |||||||| || ||||| |||||||||||||| Sbjct 5891409 CCTCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAAATCTGCAT 5891361 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| || || | || |||| ||||| || ||||| ||||| |||||||||||||| Sbjct 5916561 CCCTCCACGAAGACGGAGCACCAAGTGCAGAGTTGACTCTTTTTGAATGTTGTAGTCGGC 5916502 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | |||| | | || |||| || || || || | || |||| ||| ||||| || Sbjct 5916501 GAGGGTTCGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTCTGGTGG 5916442 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| || || || || || |||||| | | | | |||||| | || Sbjct 5916441 AATGCCCTCCTTATCCTGGATCTTAGC--CTTCACGTTGTCAATGGTGTCGGAGCTTTCG 5916384 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || ||||| || ||||| |||||||||||||| Sbjct 5916383 ACCTCCAGGGTGATGGTCTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 5916334 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 |||| ||||||||||| || |||||||||||||||| ||| |||| || | ||| Sbjct 5891107 TGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTTCGACCGTCTTCAAGCTGT 5891048 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || |||| ||| || ||| || | |||||||||||| || || Sbjct 5891047 TTCCCGGCGAATATCAGCCTCTGCTGATCCGGTGGGATGCCCTCTTTGTCTTGGATCTTG 5890988 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | |||||| | ||| || | ||| ||||| ||||||| Sbjct 5890987 GC--CTTGACATTATCGATCGTGTCGGAGCTCTCAACCTCTAGGGTTATGGTCTTTCCGG 5890930 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| ||||| |||||||| Sbjct 5890929 TAAGTGTTTTAACAAAGATCTGCAT 5890905 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || ||||| || || |||||||| || || | ||| | |||| Sbjct 5891800 AGCACCAAGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCCGCGAGAGTTCGGCCGTCT 5891741 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || || ||||| |||| |||| ||| |||||| || | |||||| || || Sbjct 5891740 TCCAGCTGCTTCCCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATGCCCTCCTTATCC 5891681 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| ||||| | | | | |||||| | || || | || || | Sbjct 5891680 TGGATCTTAGCT--TTCACGTTGTCAATGGTGTCGGAGCTTTCGACCTCTAGAGTAATTG 5891623 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 | |||||||| || ||||| ||||||||||||||| Sbjct 5891622 TCTTTCCGGTTAGAGTTTTAACAAAAATCTGCATT 5891588 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || |||||||| || || | ||| | ||| Sbjct 5917001 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTTCGCCCATCC 5916942 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| || |||| || | ||| ||||| || | || || ||||| Sbjct 5916941 TCAAGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGTGGAATCCCTTCCTTGTCC 5916882 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | | ||||| | | | | |||||| | || |||| ||||||||| Sbjct 5916881 TGAATCTTCGCTTTCACGTTGTCAATGGTGTCGGAGCTTTCGACCTCCAGGGTGATGGTC 5916822 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||| || ||||| |||||||||||||| Sbjct 5916821 TTTCCGGTGAGGGTTTTCACAAAAATCTGCAT 5916790 >seq42 Length=30274277 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| || || | || |||| || || ||||| |||||||| |||||||| || || Sbjct 11326953 CCCTCCACGAAGGCGAAGAACCAGGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGC 11327012 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | | ||||| | ||||| || ||| | || |||| ||| || || || Sbjct 11327013 CAGAGTCCTTCCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCTGGGGG 11327072 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||||| ||||| || ||||| |||||| | | | | || || | |||| Sbjct 11327073 GATACCCTCCTTGTCTTGGATCTTTGC--CTTCACATTGTCGATTGTATCAGAGCTCTCC 11327130 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||| | |||||||| || ||||||||||| || ||||| || |||||| Sbjct 11327131 ACTTCAAGAGTGATGGTCTTCCCGGTCAGCGTCTTTACAAATATTTGCATT 11327181 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | ||||||||||| || || |||||||||||||| ||| Sbjct 11333840 CCTCCACGAAGGCGAAGAACAAGGTGCAGCGTGGATTCTTTCTGTATGTTGTAGTCAGCC 11333899 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | ||||| || ||| | || |||| ||||||||| ||| Sbjct 11333900 AAAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGA 11333959 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || ||||| ||| || | | | | ||||| | ||| Sbjct 11333960 ATGCCTTCCTTGTCCTGGATTTTTGC--CTTGACATTGTCAATTGTGTCTGAGCTCTCAA 11334017 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||| ||||| || || | || || |||||||||||||| Sbjct 11334018 CTTCAAGAGTGATTGTTTTACCAGTTAAGGTCTTCACAAAAATCTGCAT 11334066 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || ||||| ||||||||||||||||| || ||| Sbjct 11520287 CCTCCACGAAGGCGAAGAACCAGGTGAAGGGTGGATTCCTTTTGTATGTTGTAATCAGCC 11520228 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | ||||| || ||| | || |||| ||| || || || Sbjct 11520227 AGAGTCCTTCCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCTGGGGGG 11520168 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| || | | |||||| | | | | ||||| | |||| Sbjct 11520167 ATACCCTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATTGTGTCAGAGCTCTCCACC 11520108 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | |||||||| || ||||||||||| || ||||| || |||||| Sbjct 11520107 TCAAGAGTGATGGTCTTCCCGGTCAGCGTCTTTACAAATATTTGCATT 11520060 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| |||| || |||| ||| || |||||||| || || |||||||| || ||| Sbjct 11327182 CCACCTCTCAGCCGGAGAACCAGATGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCC 11327241 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||| | ||||| || ||| | || |||| ||| ||||| || Sbjct 11327242 AAGGTCCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 11327301 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| |||| | ||| || | | | | ||||| ||| | Sbjct 11327302 ATTCCCTCCTTGTCTTGGATTTTCGCCTTTACATTGTCAATTGTGTCAGAACTCTCTACT 11327361 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||||||||||||||| || || || || ||||| || |||||| Sbjct 11327362 TCAAGGGTGATGGTTTTTCCAGTGAGTGTCTTAACAAAGATTTGCATT 11327409 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||| || || |||| || | | ||| Sbjct 11334767 AGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCAGCCAATGTCCGGCCATCC 11334826 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || || || ||| | ||||||| ||| ||||| ||| | ||||| ||||| Sbjct 11334827 TCCAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCC 11334886 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| |||||| | | | | || || ||| ||| | ||||||| Sbjct 11334887 TGGATCTTTGC--CTTCACGTTGTCAATTGTATCTGAACTCTCAACTTCAAGTGTGATGG 11334944 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 | ||||| || || ||||||||||| || |||||| Sbjct 11334945 TCTTTCCAGTTAGTGTTTTGACAAATATTTGCATT 11334979 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| |||| || |||| ||| || |||||||| || || |||||||| || ||| Sbjct 11520059 CCACCTCTCAGCCGGAGAACCAAATGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCC 11520000 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||| | ||||| || ||| | || |||| ||| ||||| || Sbjct 11519999 AAGGTCCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 11519940 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || ||||| ||| || | | | | ||||| ||| Sbjct 11519939 ATTCCCTCCTTGTCTTGGATTTTTGC--CTTTACATTGTCAATCGTGTCAGAACTCTCTA 11519882 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||| | ||||||||||||||| || || || || ||||| || |||||| Sbjct 11519881 CTTCAAGGGTGATGGTTTTTCCAGTGAGTGTCTTAACAAAGATTTGCATT 11519832 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 16707 ACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGG 16766 |||| || || || | || |||| || || ||||||||||| || |||||||| || | Sbjct 11520517 ACCCCCCACGAAGACGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAG 11520458 Query 16767 CCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAG 16826 | | || | |||||||| || || || ||| | || |||| ||| || || || Sbjct 11520457 CAAGTGTCCGACCATCCTCCAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGATCTGGAG 11520398 Query 16827 GCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | | ||||| ||||| ||||| |||||| | | | ||||| | |||| Sbjct 11520397 GGATCCCCTCCTTGTCCTGAATTTTGGCCTTCACATTATCTATGGTGTCTGAGCTCTCCA 11520338 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||| || ||||| ||||| || || ||||| |||||||| Sbjct 11520337 CCTCTAGTGTGATCGTCTTTCCCGTCAGGGTCTTCACAAATATCTGCAT 11520289 >seq12 Length=21026613 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||| || | ||| | ||||| Sbjct 4557218 AGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTCCGGCCGTCC 4557159 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || || | || || || || |||||| ||| | ||| || ||||| Sbjct 4557158 TCGAGCTGCTTCCCGGCGAATATGAGGCGTTGCTGGTCCGGAGGAATGCCTTCCTTGTCC 4557099 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | | ||||| || |||| || | ||| |||| Sbjct 4557098 TGGATCTTGGC--CTTCACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTTATGG 4557041 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || || || || ||||| || || |||||||| || Sbjct 4557040 TCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 4557004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405078585121930