Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq42 187 3e-42 seq3 95.1 1e-14 seq6 87.8 2e-12 seq11 86.0 7e-12 seq44 84.2 2e-11 seq43 82.4 9e-11 seq4 82.4 9e-11 >seq42 Length=30274277 Score = 187 bits (206), Expect = 3e-42 Identities = 411/610 (67%), Gaps = 7/610 (1%) Strand=Plus/Plus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 |||| | |||||||| |||||| ||||| || |||||||| || || |||||||| Sbjct 25646933 TGTAGAGCAAGCACGCGAAGTCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTG 25646992 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTA 93199 ||| ||||| || || | || || |||||||| ||||| ||||| || ||| || || Sbjct 25646993 AGAAAGTTAATCCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGA-GCAGAAGCTT 25647051 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 || || || || || ||||||||| || ||||| | | ||||||||||| || || Sbjct 25647052 CCGGAGAAGAAGATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCG 25647111 Query 93260 GAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319 || | | ||||||| | |||||| | |||||| ||| | ||| || | || Sbjct 25647112 GA---GCCGTCGATCCATCGGAGAGCCCACTGGGCTTTCTTCGCTACACAGGGGATGGTA 25647168 Query 93320 TCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 ||||| |||| ||| || | | ||| | | ||| || || | || | ||| Sbjct 25647169 TCGATTGCGTGAAAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAAC 25647228 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 ||| ||||| || || |||| || || || ||||| || ||||| ||||| | | Sbjct 25647229 AGACTGTACATCTCGGAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGA 25647288 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCA 93499 || || | || ||| || || | || || | |||| ||||| ||| || || Sbjct 25647289 GCCTCGGCGACCTGGACCTCCTTCATGAACCTTCCGGCGAGGTTTTCGAGGACGATTCCG 25647348 Query 93500 TCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC 93559 || || || || || || || | ||||| | || || || ||||| || | || Sbjct 25647349 TCAGAAGCGGCGAAGAAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTGAGG 25647408 Query 93560 TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCT 93619 || ||||| | | || | || || |||||||| ||| | ||||||||||| || Sbjct 25647409 TTTTCCCATTGACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCTGTCCAAAACGACGCC 25647468 Query 93620 TCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACG 93678 || || || |||||||| ||||| | || | || ||||| || || || ||| || || Sbjct 25647469 TCGGCCTTCTTGTACATTTCCCAGACTTCAGGGTACTGAATCGGGAACAT-ACAGAACCG 25647527 Query 93679 ATTAGGGTTA 93688 || |||||| Sbjct 25647528 ATCTGGGTTA 25647537 >seq3 Length=18779844 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/94 (83%), Gaps = 6/94 (6%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 721661 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAGAGAGG 721718 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| || ||||| |||||||||| || Sbjct 721719 GCGTGGGTTCAAATCCCACTTCTGACAAATTTTT 721752 >seq6 Length=23867706 Score = 87.8 bits (96), Expect = 2e-12 Identities = 79/97 (81%), Gaps = 7/97 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 3982687 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 3982744 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA-ATTATTATT 126357 ||||||||| || ||||| ||||||| | | ||||| Sbjct 3982745 CGTGGGTTCAAATCCCACTTCTGACAATAATTTTATT 3982781 >seq11 Length=21508407 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 2401573 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAGAGAGG 2401516 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 2401515 GCGTGGGTTCAAATCCCACTTCTGACA 2401489 >seq44 Length=22053297 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 17817829 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAGAGAGGG 17817772 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 17817771 CGTGGGTTCAAATCCCACTTCTGACA 17817746 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 21441362 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 21441419 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 21441420 TTCAAATCCCACAGCTGTCAATTT 21441443 >seq43 Length=20304914 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 18583991 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAAG 18583934 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 18583933 GCGTGGGTTCAAATCCCACTTCTGACA 18583907 >seq4 Length=19341862 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 8/94 (9%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 694309 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAAG 694366 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| || ||||| ||||| |||||| Sbjct 694367 GCGTGGGTTCAAATCCCACTTCTGAC--ATTATT 694398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556847525830680