Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq37 176 9e-39 seq35 152 1e-31 seq42 93.3 9e-14 seq1 93.3 9e-14 seq23 89.7 1e-12 seq753 87.8 4e-12 seq51 86.0 1e-11 seq43 86.0 1e-11 >seq37 Length=24396255 Score = 176 bits (194), Expect = 9e-39 Identities = 218/295 (74%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 218517 TGACTTCATCGACAAGGAGCTCAT--TCTTTTCTCGCGGTATGATGTGGAGCGTTCTATT 218574 |||||| || |||||||||| || | |||||| || | ||| | || | |||||| Sbjct 22276206 TGACTTTGTCAACAAGGAGCTTATATTGTTTTCTAT-GGCA-GATCTTCAGAGGTCTATT 22276263 Query 218575 CCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAG 218634 || |||| |||||||| || ||| || | ||||| || ||| | | |||||| Sbjct 22276264 CCTTCAATGGTTGATGGCCTAAAACCAGGTCAAAGGAAGATTCTTTTTTGCTCTTTCAAG 22276323 Query 218635 CGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCT 218694 || ||| | || ||||| || | |||||||||||||||||||| || || |||| Sbjct 22276324 CGTAACTTCATTAAAGAAGCAAAAATTGCTCAGTTTTCTGGTTATGTCTCTGAGCATTCT 22276383 Query 218695 GGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTAT 218754 | |||||||| |||||||||||||| | ||||| | |||||||||||||||| | Sbjct 22276384 GCTTACCATCATGGTGAGCAGAGTCTTGCCAGCACCATTATTGGCATGGCACAGGACTTT 22276443 Query 218755 GTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTC 218809 |||||||| |||||||| ||| | || || || || ||||| ||||| |||||| Sbjct 22276444 GTGGGCAGCAACAACATAAACCTTCTTCTACCAAATGGTCAATTTGGAACTCGTC 22276498 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 2872100 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2872041 Query 142563 CCCCAC 142568 |||||| Sbjct 2872040 CCCCAC 2872035 >seq35 Length=22702307 Score = 152 bits (168), Expect = 1e-31 Identities = 235/332 (71%), Gaps = 4/332 (1%) Strand=Plus/Minus Query 218517 TGACTTCATCGACAAGGAGCTCAT--TCTTTTCTCGCGGTATGATGTGGAGCGTTCTATT 218574 |||||| || |||||||||| || | |||||| || | ||| | || | |||||| Sbjct 13803593 TGACTTTGTCAACAAGGAGCTTATATTGTTTTCTAT-GGCA-GATCTTCAGAGGTCTATT 13803536 Query 218575 CCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAG 218634 || |||| |||||||| || ||| || | ||||| || ||| | | |||||| Sbjct 13803535 CCTTCAATGGTTGATGGCCTGAAACCAGGTCAAAGGAAGATTCTTTTTTGCTCTTTCAAG 13803476 Query 218635 CGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCT 218694 | ||| | || ||||| || | |||||||||||||||||||| || || ||| Sbjct 13803475 TGTAACTTTGTCAAAGAAGCGAAAATTGCTCAGTTTTCTGGTTATGTGTCTGAGCATTCC 13803416 Query 218695 GGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTAT 218754 | |||||||| ||||||||| | | | ||||| | |||||||||||||||| | Sbjct 13803415 GCTTACCATCATGGTGAGCAGTCTATTGCTAGCACCATTATTGGCATGGCACAGGACTTT 13803356 Query 218755 GTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTG 218814 |||||||| |||||||| ||| | || || || || ||||| ||||| ||| || | Sbjct 13803355 GTGGGCAGCAACAACATAAACCTTCTTCTACCAAATGGTCAATTTGGAACTCCTCATCAG 13803296 Query 218815 GGTGGAAAGGATAGTGCTTCTGCCAGGTATAT 218846 || || || ||| ||| ||| ||||| || Sbjct 13803295 GGGGGGAAAGATCATGCAAGTGCAAGGTACAT 13803264 >seq42 Length=30274277 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 25028329 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 25028270 Query 142563 CCCCAC 142568 |||||| Sbjct 25028269 CCCCAC 25028264 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 26018193 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 26018252 Query 142564 CCCAC 142568 ||||| Sbjct 26018253 CCCAC 26018257 >seq1 Length=23037639 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 19924171 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 19924112 Query 142563 CCCCAC 142568 |||||| Sbjct 19924111 CCCCAC 19924106 >seq23 Length=22385789 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 9272703 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 9272644 Query 142562 GCCCCAC 142568 ||||||| Sbjct 9272643 GCCCCAC 9272637 >seq753 Length=2240 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||| ||||||||||| || ||||||| || ||||||||||||||||| Sbjct 1459 AGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1400 Query 142563 CCCCAC 142568 |||||| Sbjct 1399 CCCCAC 1394 >seq51 Length=29360087 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||| ||||||||||| || ||||||| || |||||||||||||||||| Sbjct 4321938 GCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4321997 Query 142564 CCCAC 142568 ||||| Sbjct 4321998 CCCAC 4322002 >seq43 Length=20304914 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 15092029 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 15092088 Query 142564 CCCAC 142568 ||||| Sbjct 15092089 CCCAC 15092093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027811686413787