Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq57 98.7 7e-16 seq42 96.9 2e-15 >seq57 Length=24021853 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | ||||| | || || || |||||||| ||||| ||| | || Sbjct 5916106 ATGCAGATATTTGTGAAAACTCTTACAGGAAAGACCATTACTTTGGAAGTCGAAAGCTCA 5916165 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | | |||| || || || || |||||| | || |||| Sbjct 5916166 GACACGATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCACCGGACCAG 5916225 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||| ||||| || || |||||| ||| | |||||||||||| Sbjct 5916226 CAGAGGCTGATCTTTGCCGGCAAGCAGCTCGAAGATGGGCGAACCCTTGCCGATTACAAT 5916285 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| || || |||||||| |||| | ||| | || ||||| Sbjct 5916286 ATCCAGAAAGAGTCAACTCTTCACTTGGTCCTCCGTCTTCGTGGAGG 5916332 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | || || | || || || |||||||| ||||| ||| | | Sbjct 5891133 ATGCAGATATTTGTGAAGACTCTTACAGGAAAGACCATTACTTTGGAAGTCGAAAGCTCC 5891192 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || |||| || || || || |||||| | || |||| Sbjct 5891193 GACACCATCGACAATGTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCACCGGACCAG 5891252 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||| ||||| || || |||||| ||| | |||||||||||| Sbjct 5891253 CAGAGGCTGATCTTTGCCGGCAAGCAGCTCGAAGATGGGCGAACCCTTGCCGATTACAAT 5891312 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| || || |||||||| |||| | ||| | || ||||| Sbjct 5891313 ATCCAGAAAGAGTCAACTCTTCACTTGGTCCTCCGTCTCCGTGGAGG 5891359 >seq42 Length=30274277 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| | || || | || || || ||||| || | ||| ||| | | Sbjct 11327181 AATGCAAATATTTGTAAAGACGCTGACCGGGAAGACCATCACTCTTGAAGTGGAGAGCTC 11327122 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | ||| ||| || || || |||||| | || | | || Sbjct 11327121 TGATACAATCGACAATGTGAAGGCAAAGATCCAAGACAAGGAGGGTATCCCCCCAGATCA 11327062 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || ||||||||||| ||||| || || ||| || ||| |||| |||||||| Sbjct 11327061 GCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTACAA 11327002 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| |||||||| || ||||| |||| | || | || ||||| Sbjct 11327001 CATTCAAAAGGAATCCACCCTTCACCTGGTTCTTCGCCTTCGTGGAGG 11326954 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | || || ||||| || ||||| || || | ||| || | || Sbjct 11482307 ATGCAGATATTTGTGAAGACCTTAACTGGTAAAACAATCACTCTTGAAGTTGAGAGCTCA 11482366 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||||||| || || || || | ||| ||||| Sbjct 11482367 GACACAATTGACAATGTCAAGGCAAAAATTCAGGACAAGGAAGGCATTCCTCCTGACCAA 11482426 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||||||||| ||||| || || ||| ||| |||| || |||||| Sbjct 11482427 CAGAGGCTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGCACTTTGGCTGACTACAAT 11482486 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || ||||| |||||||| ||||| Sbjct 11482487 ATACAGAAAGAATCTACGCTTCA 11482509 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| |||| ||| | || || |||||||| ||| | ||| || | Sbjct 11519832 AATGCAAATCTTTGTTAAGACACTCACTGGAAAAACCATCACCCTTGAAGTAGAGAGTTC 11519891 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || ||| | | | || | ||| |||||| || || ||||| | || | |||| Sbjct 11519892 TGACACGATTGACAATGTAAAGGCAAAAATCCAAGACAAGGAGGGAATCCCCCCAGACCA 11519951 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || ||||||||||| ||||| || || ||| || |||| |||||||| Sbjct 11519952 GCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGGACCTTGGCAGATTACAA 11520011 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 |||||||| || || || |||||| |||| Sbjct 11520012 CATTCAGAAAGAGTCCACCCTTCATTTGGT 11520041 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | || || | || || ||||| || ||| | ||| || || Sbjct 11334294 ATGCAAATATTTGTGAAGACCCTTACTGGTAAAACTATCACCCTTGAAGTTGAGAGTTCA 11334235 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || |||||| || || || ||| | || |||| Sbjct 11334234 GACACTATCGACAATGTGAAAGCAAAAATCCAGGACAAGGAAGGTATTCCACCCGACCAG 11334175 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||||||||| || || ||||||||| |||| |||| || |||||| Sbjct 11334174 CAGAGGCTAATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGAACTTTGGCTGACTACAAT 11334115 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || ||||||||||| || ||||| Sbjct 11334114 ATACAGAAGGAATCAACCCTTCA 11334092 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| | |||||| |||| || || ||||| || | ||| || | Sbjct 11334979 AATGCAAATATTTGTCAAAACACTAACTGGAAAGACCATCACACTTGAAGTTGAGAGTTC 11334920 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | | | ||| ||| || || || |||||| | ||| | |||| Sbjct 11334919 AGATACAATTGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCA 11334860 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| |||||||||||||| || || || || ||| || |||| ||||| || Sbjct 11334859 GCAGAGGCTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGGACATTGGCTGATTATAA 11334800 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| || || ||||| |||| | ||| | |||| || Sbjct 11334799 CATCCAGAAGGAGTCCACCCTTCACTTGGTTCTCCGTCTGAGAGGTGG 11334752 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| |||| ||| | || || |||||||| ||| | ||| || | Sbjct 11327409 AATGCAAATCTTTGTTAAGACACTCACTGGAAAAACCATCACCCTTGAAGTAGAGAGTTC 11327350 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | ||| ||||| || || ||||| | || | |||| Sbjct 11327349 TGACACAATTGACAATGTAAAGGCGAAAATCCAAGACAAGGAGGGAATCCCCCCAGACCA 11327290 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || ||||||||||| ||||| || || ||| || |||| |||||||| Sbjct 11327289 GCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGGACCTTGGCAGATTACAA 11327230 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 |||||||| || || || |||||| |||| Sbjct 11327229 CATTCAGAAAGAGTCCACCCTTCATCTGGT 11327200 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | || || | || || ||||| || || | || ||| | | Sbjct 11333838 ATGCAGATATTTGTGAAGACCCTGACAGGTAAAACTATCACACTTGAGGTGGAGAGCTCT 11333779 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||| ||| || || |||||| | ||| | | || Sbjct 11333778 GACACCATAGATAATGTGAAGGCAAAGATTCAAGACAAGGAGGGTATCCCTCCAGATCAG 11333719 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || || |||||||| || || ||||| ||| || |||| ||||||||| Sbjct 11333718 CAGAGGCTCATATTTGCTGGAAAGCAGCTAGAGGATGGGCGGACCTTGGCAGATTACAAT 11333659 Query 22014 ATTCAGAAGGAATCTACTCTTCAT 22037 ||||||||||||||||| |||||| Sbjct 11333658 ATTCAGAAGGAATCTACACTTCAT 11333635 Score = 82.4 bits (90), Expect = 5e-11 Identities = 111/152 (73%), Gaps = 7/152 (5%) Strand=Plus/Plus Query 21912 AAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAACCAACAGAGACTTATCTTT 21968 ||||||||| || || || || ||| | ||||| |||| ||||| || |||||| Sbjct 11482158 AAGCAAAAA-TTCAGGACAAGGAAGGTATTCCACCTG---ACCAGCAGAGGCTAATCTTT 11482213 Query 21969 GCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCT 22028 ||||| || || ||||||||| |||| |||| || ||||| || ||||||||||| Sbjct 11482214 GCTGGTAAGCAGCTAGAAGATGGTCGAACTTTGGCTGACTACAACATACAGAAGGAATCA 11482273 Query 22029 ACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| | || | || ||||| || || Sbjct 11482274 ACCCTTCACCTTGTTCTCCGCTTACGTGGGGG 11482305 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| | || || | || || || ||||| || | || ||| | | Sbjct 11520060 AATGCAAATATTTGTAAAGACGCTGACCGGGAAGACCATCACTCTTGAGGTGGAGAGCTC 11520119 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | ||| || || || || |||||| | || | | || Sbjct 11520120 TGACACAATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAGGGTATCCCCCCAGATCA 11520179 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || ||||||||||| ||||| || || ||| || ||| |||| |||||||| Sbjct 11520180 GCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTACAA 11520239 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || |||||||| || ||||| |||| | || | || ||||| Sbjct 11520240 CATACAAAAGGAATCCACCCTTCACCTGGTTCTTCGCCTTCGTGGAGG 11520287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358116476620078