Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq42 183 6e-41 >seq42 Length=30274277 Score = 183 bits (202), Expect = 6e-41 Identities = 559/853 (66%), Gaps = 22/853 (3%) Strand=Plus/Minus Query 42301 TCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGG 42360 ||||| |||||||||||||| || || ||||| |||||||| | ||||| Sbjct 25647493 TCTGGGAAATGTACAAGAAGGCCGAGGCGTCGTTTTGGACAGCCGAGGAAGTCGACCTCT 25647434 Query 42361 CCAAGGACACGGCCGGC--TGGGAG----TCACTGTCTGAGAACGAAAAGTTTTTCCTCA 42414 | ||||| | || | ||||| |||| | | || ||| ||| ||| ||| Sbjct 25647433 CTCAGGACCAG--CGTCAATGGGAAAACCTCAC---CAGCGA-CGAGAAGCACTTCATCA 25647380 Query 42415 AAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCA 42474 | || || |||||||||||||| |||||||| || ||| || ||||| ||| | Sbjct 25647379 GTCATATCCTTGCCTTCTTCGCCGCTTCTGACGGAATCGTCCTCGAAAACCTCGCCGGAA 25647320 Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534 |||||||||| ||||| ||| | ||||| || |||||| || || ||||| |||| Sbjct 25647319 GGTTCATGAAGGAGGTCCAGGTCGCCGAGGCTCGTGCCTTCTATGGATTTCAGATTGCCA 25647260 Query 42535 TAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCG 42594 | || ||| | ||||| ||| ||||| || | | |||| ||| |||||| Sbjct 25647259 TTGAAAACATCCACTCCGAGATGTACAGTCTGTTGTTAGAATCGTATATCAAGGATCCAA 25647200 Query 42595 TCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGG 42654 ||| ||| |||| || | || || || || || ||||| | |||||| || Sbjct 25647199 AGGAGAAAAACAGGCTCTTTCACGCAATCGATACCATCCCCTGTGTAGCGAAGAAAGCCC 25647140 Query 42655 ACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCT 42714 | ||||| ||| |||||||| | |||| ||| || | ||| | ||| | || | Sbjct 25647139 AGTGGGCTCTCCGATGGATCGACGGCTCCGA---AACCTTTGCCGAACGCCTGCTCGCAT 25647083 Query 42715 TTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774 | || ||| || |||||||||||||| || |||| ||| || |||||||| ||| Sbjct 25647082 TCGCCTGCGTGGAAGGCATCTTCTTCTCCGGAAGCTTCTGCTCGATATTCTGGCTAAAG- 25647024 Query 42775 AGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGG 42833 | | | ||| ||||| ||| | || ||||| || || | ||| | |||||||| Sbjct 25647023 AAACGCGGTCTCATGCCGGGATTAACTTTCTCAAATGAGTTAATCTCGCGAGACGAGGGC 25646964 Query 42834 CTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAG 42893 | || | ||||| || || | || ||| |||| || ||| | || | || Sbjct 25646963 TTACACTGCGACTTCGCGTG---CTTGCTCTACAGCCTACTTAGGAATAAACTGAGCGAG 25646907 Query 42894 GAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAG 42953 ||| | || ||| ||| || | || | ||||| || || | |||||| || | Sbjct 25646906 GAGAGAGTGAAGGCAATCGTCGCCGACTCGGTGGATATAGAAAGAGAGTTCGTCTGCGAC 25646847 Query 42954 TCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTA 43012 || || ||||| | || || || |||||| | || ||| || | |||||| | | Sbjct 25646846 GCGTTG-CCGTGCGCTCTAGTGGGGATGAACAGTGCTCTAATGAGCCAATACATCGAATT 25646788 Query 43013 CGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCC 43072 ||| ||||| | || || || ||||| | | | |||||| || || Sbjct 25646787 CGTTGCCGATCGCCTGCTCGGCGCCTTGGGTTACGGGAAGATGTACAACGTTTCGAATCC 25646728 Query 43073 CTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 43132 ||||||| |||||| ||||| || |||| ||||||||||| ||||||||| | || Sbjct 25646727 GTTCGACTGGATGGAGCTAATCTCTTTACAGGGAAAGACCAACTTCTTCGAGAAGAGGGT 25646668 Query 43133 CGCCGACTACCAG 43145 | || || ||| Sbjct 25646667 TGGGGAGTATCAG 25646655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944316689314320