Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq42 98.7 8e-16 >seq42 Length=30274277 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||||||| || |||| |||||| ||| ||| ||||||||||||||||||||| Sbjct 11520059 CCACCTCTCAGCCGGAGAACCAAATGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCC 11520000 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || || | || || || ||||| || || | |||||| || || Sbjct 11519999 AAGGTCCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 11519940 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTAGATTCG 34077 | | ||| ||||| |||||| ||| | || | || | |||| | || Sbjct 11519939 ATTCCCTCCTTGTCTTGGATTTTTGCCTTTACATTGTCAATC---GTGTCAGAACTCTCT 11519883 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | || || |||||||| || ||||| || ||||||||||||||| Sbjct 11519882 ACTTCAAGGGTGATGGTTTTTCCAGTGAGTGTCTTAACAAAGATTTGCATT 11519832 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||||||| || ||||||||||| ||| ||| ||||||||||||||||||||| Sbjct 11327182 CCACCTCTCAGCCGGAGAACCAGATGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCC 11327241 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || || | || || || ||||| || || | |||||| || || Sbjct 11327242 AAGGTCCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 11327301 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTAGATTCG 34077 | | ||| ||||| ||||| ||| | || | | | |||| | || Sbjct 11327302 ATTCCCTCCTTGTCTTGGATTTTCGCCTTTACATTGTCA---ATTGTGTCAGAACTCTCT 11327358 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | || || |||||||| || ||||| || ||||||||||||||| Sbjct 11327359 ACTTCAAGGGTGATGGTTTTTCCAGTGAGTGTCTTAACAAAGATTTGCATT 11327409 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || || |||| ||||| ||| ||||||||||||||||||||| | ||| ||| || Sbjct 11520506 AGACGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAG-CAAGTGTCCG 11520448 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || ||||| ||||| || ||||| ||||| | ||||||||| || | | ||| Sbjct 11520447 ACCATCCTCCAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGATCTGGAGGGATCCCCTC 11520388 Query 34029 TTTGTCCATAATTTT 34043 |||||| |||||| Sbjct 11520387 CTTGTCCTGAATTTT 11520373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397053171649414