Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq42 105 8e-18 seq51 93.3 5e-14 >seq42 Length=30274277 Score = 105 bits (116), Expect = 8e-18 Identities = 179/257 (70%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 |||||||| || ||||| | ||||| ||||| | ||| ||||||||||| || ||| Sbjct 25646965 CCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGTTAATCCCGGCATGAGACCGCGTTTC 25647024 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| |||| || || || ||||||||||| || ||||| || ||||| Sbjct 25647025 TTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAGATGCCTTCCACGCAGGCGAAT 25647084 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 || | || || || ||||||| || ||| | ||| | |||||||| Sbjct 25647085 GCGAGCAGGCGTTCGGCAAAGGTTTCGGA---GCCGTCGATCCATCGGAGAGCCCACTGG 25647141 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCT--G 126302 || || ||| | | ||| |||| ||| | ||| || | |||||| ||| |||||| Sbjct 25647142 GCTTTCTTCGCTACACAGGGGATGGTATCGATTGCGTGAAAGAG--CCTGTTTTTCTCCT 25647199 Query 126303 ATGGATCTTTGATGTAC 126319 |||||| ||||| ||| Sbjct 25647200 TTGGATCCTTGATATAC 25647216 >seq51 Length=29360087 Score = 93.3 bits (102), Expect = 5e-14 Identities = 189/281 (67%), Gaps = 10/281 (4%) Strand=Plus/Plus Query 10877 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGC 10936 || ||||||||||| ||||| || |||||||||||||| || | ||||||||| | Sbjct 1216651 AATCCATCCATCTCTGTCAACAGCTGATTGATGGTTTGCTCTCTCTCATCATTCCCACCT 1216710 Query 10937 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAC 10996 | ||| || | | ||| | || || || ||||||||||| ||||| || || || Sbjct 1216711 CCAAGACCTGCCCCTCTCTGCCTCCCCACTGCATCAATTTCATCAATGAACACAATGCAG 1216770 Query 10997 GG-----TTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACAC 11051 || |||||||| || ||||| | || |||||||| || || || | Sbjct 1216771 GGTGCCTTTGATTTT-----GCCTTCTCAAACAAGTCCCGGACTCTGGATGCTCCCACTC 1216825 Query 11052 CCACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCAC 11111 | ||||||| ||| || || | | ||| | || || ||| || || | ||| | Sbjct 1216826 CTACAAACAATTCAACGAATTCAGAGGCTGCGCACGAGAAGAATGGCACACCTGCTTCTC 1216885 Query 11112 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152 | || | |||| ||| || |||||||| || || || ||| Sbjct 1216886 CGGCCACTGCTCTGGCCAGTAGGGTCTTGCCGGTTCCGGGT 1216926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597339360583560