Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq42 100 3e-16 seq12 100 3e-16 seq23 93.3 4e-14 seq57 89.7 5e-13 >seq42 Length=30274277 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || || || | ||| | || | | |||| ||||| || ||||||||||| | Sbjct 11482305 CCCCCACGTAAGCGGAGAACAAGGTGAAGGGTTGATTCCTTCTGTATGTTGTAGTCAGCC 11482246 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || || || ||||| | | ||||||| | ||| ||||| || || Sbjct 11482245 AAAGTTCGACCATCTTCTAGCTGCTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGTGGA 11482186 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| ||| |||||| ||| | | || | ||||| | ||| || Sbjct 11482185 ATACCTTCCTTGTCC-TGAATTTTTGCTTTCACATTATCAATAGTGTCTGAACTCTCTAC 11482127 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||||||||||| || || || |||||||| |||||| Sbjct 11482126 TTCAAGGGTGATAGTTTTACCAGTAAGGGTCTTCACAAAAATTTGCATG 11482078 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| |||||| | ||| || || | | | |||||||| || ||||||||||| Sbjct 11334295 GCCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGC 11334354 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || || |||||||| | | | || || | ||| ||||| || || Sbjct 11334355 CAATGTCCGACCATCTTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGGTCTGGGGG 11334414 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| |||||| ||| | | || | |||||| | ||| || Sbjct 11334415 AATACCCTCCTTGTCCTGGATTTTAGCTTTCACATTATCGATGGTGTCTGAACTCTCAAC 11334474 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||||| ||||| || || || |||||||| |||||| Sbjct 11334475 TTCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCATG 11334523 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || || || ||||||||||| || ||| || ||||| || ||||| || | | Sbjct 11333873 GATTCTTTCTGTATGTTGTAGTCAGCCAAAGTGCGGCCATCCTCAAGCTGTTTTCCAGCA 11333932 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || | ||||||||| ||||| || ||||| ||||| ||||||| || | | Sbjct 11333933 AAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATTTTTGCCTTGACA 11333992 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||| | ||| || || | || | ||||||||||| | || || Sbjct 11333993 TTG-TCAATTGTGTCTGAGCTCTCAACTTCAAGAGTGATTGTTTTACCAGTTAAGGTCTT 11334051 Query 138600 TACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 11334052 CACAAAAATCTGCAT 11334066 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| ||||| || || |||||||| || ||| || || || || || ||||| | Sbjct 11334099 TTGATTCCTTCTGTATATTGTAGTCAGCCAAAGTTCGACCATCTTCTAGCTGCTTACCAG 11334158 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | ||||||| | ||| ||||| || || |||||||| ||||| ||||||| ||| | Sbjct 11334159 CAAAGATTAGCCTCTGCTGGTCGGGTGGAATACCTTCCTTGTCCTGGATTTTTGCTTTCA 11334218 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 ||||| | | ||||| | ||| || || | || | ||||||||||| || || Sbjct 11334219 CATTGT-CGATAGTGTCTGAACTCTCAACTTCAAGGGTGATAGTTTTACCAGTAAGGGTC 11334277 Query 138598 TTTACAAAAATCTGCATG 138615 || ||||| || |||||| Sbjct 11334278 TTCACAAATATTTGCATG 11334295 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || || | ||| ||||| | | | ||||| || ||||||||||| || | Sbjct 11520059 CCACCTCTCAGCCGGAGAACCAAATGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCC 11520000 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || |||||||| | | |||| || | ||| ||||| || || Sbjct 11519999 AAGGTCCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 11519940 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||||||| |||| |||| || | ||||| | ||| || Sbjct 11519939 ATTCCCTCCTTGTCTTGGATTTTTGCCTTTACATTG-TCAATCGTGTCAGAACTCTCTAC 11519881 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| || || || ||||| || ||||| Sbjct 11519880 TTCAAGGGTGATGGTTTTTCCAGTGAGTGTCTTAACAAAGATTTGCAT 11519833 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||| ||||| || || || ||| ||||| || || || || | | Sbjct 11482728 GATTCCTTCTGAATATTGTAATCTACCAAGGTCCGCCCATCCTCTAGCTGCTTTCCAGCA 11482669 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| || || ||||| || || || ||||| ||| | |||| || | Sbjct 11482668 AAGATGAGCCTCTGCTGATCTGGAGGGATGCCCTCCTTGTCT-TGAATCTTTGCCTTCAC 11482610 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | ||||||||| | || | ||||||||| ||||| || || Sbjct 11482609 ATTATCTATGGTGTCAGAGCTCTCCACCTCTAGTGTGATCGTTTTACCTGTCAGGGTCTT 11482550 Query 138600 TACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 11482549 CACAAAAATCTGCAT 11482535 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || || || || |||||||| || ||| || ||||| || ||||| || | | Sbjct 11482500 GATTCTTTCTGTATATTGTAGTCAGCCAAAGTGCGGCCATCCTCAAGCTGTTTTCCAGCA 11482441 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || | ||||||||| ||||| || ||||| ||||| ||| |||||| || | Sbjct 11482440 AAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCCTTGTCC-TGAATTTTTGCCTTGAC 11482382 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | ||||| | ||| || || | || | ||||||||||| | || | Sbjct 11482381 ATTGT-CAATTGTGTCTGAGCTCTCAACTTCAAGAGTGATTGTTTTACCAGTTAAGGTCT 11482323 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 11482322 TCACAAATATCTGCAT 11482307 >seq12 Length=21026613 Score = 100 bits (110), Expect = 3e-16 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| || ||||||||||| ||| | || || ||||||||| || || |||| Sbjct 4557200 GACTCCTTCTGGATGTTGTAGTCAGCT-AGGGTCCGGCCGTCCTCGAGCTGCTTCCCGGC 4557142 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 | || || || || ||||||||||| || ||||| ||||| ||| || || | Sbjct 4557141 GAATATGAGGCGTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC 4557082 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||||| | | |||||| | ||||||||||| | || | || ||||| || || |||| Sbjct 4557081 ATTGT-CGATGGTGTCAGAGGACTCCACCTCAAGGGTTATGGTCTTACCCGTTAGGGTTT 4557023 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 4557022 TCACGAAGATCTGCAT 4557007 >seq23 Length=22385789 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || |||||| || ||||| || | Sbjct 4579854 GACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCCAGCTGTTTTCCAGCG 4579795 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAA 138539 |||| |||||||| |||||||| || || ||||| ||||| ||| || || | Sbjct 4579794 AAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGGCA 4579735 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | ||| || ||||| | || | || || || || || ||||| Sbjct 4579734 TTG-TCGATGGTGTCAGACGATTCAACCTCTAAGGTTATGGTCTTCCCCGTTAGGGTTTT 4579676 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 4579675 CACGAAGATCTGCAT 4579661 >seq57 Length=24021853 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||||| || | | | |||||||| || |||||||||||| | Sbjct 5916104 CCACCGCGGAGACGAAGCACTAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 5916045 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||| || || || || |||| | ||||| | ||| || ||||| || Sbjct 5916044 AGAGTTCGACCGTCTTCAAGCTGCTTCCCGGCGAATATTAGCCTCTGCTGATCCGGTGGG 5915985 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || |||||||| ||| || || | | || | ||||| | ||| ||| Sbjct 5915984 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCGATCGTGTCCGAGCTCTCAACC 5915925 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||| || || || |||||||| ||||| |||||||| Sbjct 5915924 TCTAGGGTTATCGTCTTTCCGGTAAGAGTTTTGACAAAGATCTGCAT 5915878 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | | |||||||| ||||||||||| || Sbjct 5917016 CCACCGCGCAGACGAAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 5916957 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| ||| ||||| || || || |||| | || || | ||| ||||| || || Sbjct 5916956 AGAGTTCGCCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGTGGA 5916897 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || | ||| | |||| | | |||||||| || | Sbjct 5916896 ATCCCTTCCTTGTCC-TGAATCTTCGCTTTCACGTTGT-CAATGGTGTCGGAGCTTTCGA 5916839 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || || ||||| |||||||||||||| Sbjct 5916838 CCTCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAAATCTGCAT 5916790 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || | | || || || || || |||| Sbjct 5917211 GACTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCGGCG 5917152 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--A 138538 |||| || | ||| || ||||| || || || || ||||| ||| | |||| ||| Sbjct 5917151 AAGATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTC-CTGAATCTTTGCTTTGAC 5917093 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||||| ||||||||| | ||| | || || |||||||| || | Sbjct 5917092 ATTG-TCAATGGTGTCGGAACTCTCCACCTCCAGCGTGATGGTCTTTCCAGTCAGTGTCT 5917034 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 5917033 TCACGAAGATTTGCAT 5917018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496250570345040