Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq42 109 4e-19 seq57 104 2e-17 >seq42 Length=30274277 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || ||||||||||| || | | ||| | ||||||| || Sbjct 11482281 TGAAGGGTTGATTCCTTCTGTATGTTGTAGTCAGCCAAAGTTCGACCATCTTCTAGCTGC 11482222 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | || | | ||| ||||| |||||| ||||||||||| |||||| Sbjct 11482221 TTACCAGCAAAGATTAGCCTCTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGAATTTTT 11482162 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || ||||| || | | ||||| || | ||| || |||||||| || Sbjct 11482161 GCTTTCACATTATCAATAGTGTCTGAACTCTCTACTTCAAGGGTGATAGTTTTACCAGTA 11482102 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||||||||| Sbjct 11482101 AGGGTCTTCACAAAAATTTGCAT 11482079 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| ||| | | ||| || ||||||||||| || || || |||||||| || Sbjct 11334294 TGCCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCC- 11334352 Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 | ||| || | ||||| | ||||| ||||| |||| | | ||| ||||| Sbjct 11334353 -GCCAATGTCCGACCATCTTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGGTCTGG 11334411 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 ||||| || |||||||| ||||| ||| ||| | || || || || | | || Sbjct 11334412 GGGAATACCCTCCTTGTCCTGGATTTTAGCTTTCACATTATCGATGGTGTCTGAACTCTC 11334471 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | |||||| ||||| || || || || || |||||||||||||| Sbjct 11334472 AACTTCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 11334522 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || ||||| ||||| || | | ||| | ||||||| || Sbjct 11334092 TGAAGGGTTGATTCCTTCTGTATATTGTAGTCAGCCAAAGTTCGACCATCTTCTAGCTGC 11334151 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | || | | ||| |||||| |||||| ||||||||||| ||||| Sbjct 11334152 TTACCAGCAAAGATTAGCCTCTGCTGGTCGGGTGGAATACCTTCCTTGTCCTGGATTTTT 11334211 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || ||||| || | | || || || | ||| || |||||||| || Sbjct 11334212 GCTTTCACATTGTCGATAGTGTCTGAACTCTCAACTTCAAGGGTGATAGTTTTACCAGTA 11334271 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| |||||||| Sbjct 11334272 AGGGTCTTCACAAATATTTGCAT 11334294 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||||| || | | ||| ||||||||||| || ||||| || ||||||||||| || Sbjct 11520059 CCACCTCTCAGCCGGAGAACCAAATGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCC 11520000 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | || || | ||||| ||||| | || | | ||| ||||| || Sbjct 11519999 AAG-GTCCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGGG 11519941 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||| |||||||| ||||| |||||| | || || || || | | ||||| Sbjct 11519940 GATTCCCTCCTTGTCTTGGATTTTTGCCTTTACATTGTCAATCGTGTCAGAACTCTCTAC 11519881 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| |||||||| || || || || || ||||| |||||||| Sbjct 11519880 TTCAAGGGTGATGGTTTTTCCAGTGAGTGTCTTAACAAAGATTTGCAT 11519833 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||||| || | | ||| | ||||||||| || ||||| || ||||||||||| || Sbjct 11327182 CCACCTCTCAGCCGGAGAACCAGATGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCC 11327241 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | || || | ||||| ||||| | || | | ||| ||||| || Sbjct 11327242 AAG-GTCCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGGG 11327300 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||| |||||||| ||||| |||||| | || || || || | | ||||| Sbjct 11327301 GATTCCCTCCTTGTCTTGGATTTTCGCCTTTACATTGTCAATTGTGTCAGAACTCTCTAC 11327360 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| |||||||| || || || || || ||||| |||||||| Sbjct 11327361 TTCAAGGGTGATGGTTTTTCCAGTGAGTGTCTTAACAAAGATTTGCAT 11327408 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| ||| | | ||| || ||||| || || ||||| || ||||| ||||| Sbjct 11481851 TGCCACCTCTCAAACGGAGAACCAAGTGAAGTGTGGACTCTTTCTGGATGTTATAATCA- 11481793 Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 | ||| || | || || | || || || || | || | | ||| ||||| Sbjct 11481792 -GCCAATGTCCGGCCATCCTCAAGCTGCTTACCTGCAAAAATGAGCCTCTGCTGGTCTGG 11481734 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 ||||| || |||||||| ||||| ||| ||| | || || || || | | || Sbjct 11481733 GGGAATGCCCTCCTTGTCCTGGATTTTCGCTTTAACATTATCGATGGTGTCTGAACTCTC 11481674 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | ||||||||| ||||| || || || || |||||||||||||| Sbjct 11481673 AACTTCAAGGGTAATGGTCTTACCAGTAAGGGTCTTCACAAAAATTTGCAT 11481623 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| ||| | | ||| || |||||||| || || || || |||||||||||| Sbjct 11482079 TGCCACCTCTCAAACGGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCG- 11482021 Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 | ||| || | ||||| | || || ||||| |||| | | ||| ||||| Sbjct 11482020 -GCCAATGTCCGACCATCTTCGAGCTGCTTACCAGCAAATATGAGCCTCTGCTGGTCTGG 11481962 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 || || || |||||||| ||||| ||| || | || || || || | | || Sbjct 11481961 GGGGATACCCTCCTTGTCCTGGATTTTTGCTTTAACGTTATCAATGGTGTCTGAACTCTC 11481902 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | || || ||||| || || || || || |||||||||||||| Sbjct 11481901 AACTTCAAGTGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 11481851 >seq57 Length=24021853 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || || || |||||||| || || || ||||||||||| Sbjct 5917016 CCACCGCGCAGACGAAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 5916957 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| ||| | | || || | || ||||| ||| | |||| | ||| ||||| |||| Sbjct 5916956 AGAGTTCGCCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGTGGA 5916897 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||| || ||| || | || || || ||| |||| || Sbjct 5916896 ATCCCTTCCTTGTCCTGAATCTTCGCTTTCACGTTGTCAATGGTGTCGGAGCTTTCGACC 5916837 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || || || || ||||| |||||||| ||||| Sbjct 5916836 TCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAAATCTGCAT 5916790 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || || || ||||| || ||||| || ||||||||||| | Sbjct 5891815 CCACCACGCAGACGAAGCACCAAGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCCGCG 5891756 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| ||| ||||||| | || || || ||| | |||| | ||| ||||| |||| Sbjct 5891755 AGAGTTCGGCCGTCTTCCAGCTGCTTCCCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGA 5891696 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || ||||| || || || ||| || | || || || ||| |||| || Sbjct 5891695 ATGCCCTCCTTATCCTGGATCTTAGCTTTCACGTTGTCAATGGTGTCGGAGCTTTCGACC 5891636 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| ||||| || || || || |||||||| |||||||| ||||| Sbjct 5891635 TCTAGAGTAATTGTCTTTCCGGTTAGAGTTTTAACAAAAATCTGCAT 5891589 Score = 95.1 bits (104), Expect = 9e-15 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| || || | ||| | ||||| | || Sbjct 5892020 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTG 5891961 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091 || |||||| | ||||| | ||| || || ||| || ||||||||||| ||| || Sbjct 5891960 CTTCCCAGCGAAGATCAATCTCTGCTGATCCGGTGGGATCCCTTCCTTGTCCTGAATCTT 5891901 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 ||| ||| ||| | || || || ||| | | || || || | || ||||| || || | Sbjct 5891900 TGC-TTTCACATTATCAATGGTGTCGGAACTCTCCACCTCCAGCGTGATGGTCTTCCCAG 5891842 Query 15152 TCAGAGTTTTTACAAAAATTTGCATA 15177 ||||||| || || || ||||||||| Sbjct 5891841 TCAGAGTCTTCACGAAGATTTGCATA 5891816 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || || || |||||||| |||||||||||| ||| ||| ||||||| Sbjct 5916770 ACCAAGTGCAGAGTTGACTCTTTTTGAATGTTGTAATCGGCGAGGGTTCGGCCGTCTTCC 5916711 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || || ||| | |||| | ||| ||||| |||||| || ||||| || Sbjct 5916710 AGCTGCTTTCCGGCGAAAATCAGCCTCTGCTGGTCTGGTGGAATGCCCTCCTTATCCTGG 5916651 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||| || | || || || ||| | || || || | ||| ||||| || Sbjct 5916650 ATCTTCGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCGACCTCCAGGGTGATGGTCTTT 5916591 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||||||||| ||||| Sbjct 5916590 CCGGTGAGGGTTTTTACAAAAATCTGCAT 5916562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357383693651495