Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq57 114 1e-20 seq49 96.9 3e-15 seq42 86.0 6e-12 >seq57 Length=24021853 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | ||| | ||||| ||||| || ||||| || || |||||| Sbjct 5916791 ATCCCTCCACGAAGACGGAGCACCAAGTGCAGAGTTGACTCTTTTTGAATGTTGTAATCG 5916732 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || |||| || |||| || ||||| ||| | |||| | |||||||| || Sbjct 5916731 GCGAGGGTTCGGCCGTCTTCCAGCTGCTTTCCGGCGAAAATCAGCCTCTGCTGGTCTGGT 5916672 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || ||||| || || || ||| | || | || | ||||||||| ||| Sbjct 5916671 GGAATGCCCTCCTTATCCTGGATCTTCGCTTTCA-CGTTGTCAATGGTGTCGGAGCTCTC 5916613 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| || || || | || || ||||| || |||||||||||||| |||||| Sbjct 5916612 GACCTCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTTACAAAAATCTGCATC 5916561 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| ||||| | | ||| | |||||||| || || || ||||| || || || Sbjct 5891590 ATTCCTCCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCTTTCTGGATGTTGTAGTCA 5891531 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || |||| ||| |||| || || || ||| | |||| | ||||||||||| Sbjct 5891530 GCGAGGGTTCGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTCCGGT 5891471 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || || || || || || | || | || | ||||||||| || Sbjct 5891470 GGAATGCCCTCCTTGTCCTGGATCTTAGCCTTCA-CGTTGTCAATGGTGTCGGAGCTTTC 5891412 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| || || || | || || ||||| || ||||| |||||||| |||||| Sbjct 5891411 GACCTCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAAATCTGCATC 5891360 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||| || || || || || ||||| || ||| || |||| || Sbjct 5891791 TGGAGGGTTGACTCTTTCTGAATGTTGTAATCCGCGAGAGTTCGGCCGTCTTCCAGCTGC 5891732 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | |||| | ||||||||||| |||||||| || ||||| || || || Sbjct 5891731 TTCCCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATGCCCTCCTTATCCTGGATCTTA 5891672 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||| | || | || | ||||||||| ||||| || ||||||| || || ||||| Sbjct 5891671 GCTTTCA-CGTTGTCAATGGTGTCGGAGCTTTCGACCTCTAGAGTAATTGTCTTTCCGGT 5891613 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||| |||||||| ||||| Sbjct 5891612 TAGAGTTTTAACAAAAATCTGCAT 5891589 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| | ||||||||| || || || || || || || |||||||| |||||||| Sbjct 22348726 TTCCTCCCCTGAGCCTCAAAACAAGGTGAAGTGTGGACTCTTTTTGGATGTTATAATCTG 22348667 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | || | ||| |||| |||||| || || | ||||||| ||||| || || | Sbjct 22348666 CAAGAGTGCGACCATCTTCCAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAG 22348607 Query 45232 GAATGCCTTCTTTATCTTGAA 45252 |||||||||| || || |||| Sbjct 22348606 GAATGCCTTCCTTGTCCTGAA 22348586 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | || | || || ||||| || || |||||||| |||||| Sbjct 5891362 ATCCCTCCACGGAGACGGAGGACCAAGTGAAGAGTTGACTCTTTCTGGATATTGTAATCG 5891303 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| ||| || | || || || || | |||| | ||||||||||| Sbjct 5891302 GCAAGGGTTCGCCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGT 5891243 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || || || || || || ||| | || | ||||||||| ||| Sbjct 5891242 GGAATACCCTCCTTGTCCTGGATCTTGGCTTTAACATTGTCGATGGTGTCGGAGCTTTCG 5891183 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| | ||||| || || || || ||||| || ||||| || |||||| Sbjct 5891182 ACTTCCAAAGTAATGGTCTTTCCTGTAAGAGTCTTCACAAATATCTGCATC 5891132 >seq49 Length=17126926 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || || || ||||| ||||| |||||||| || ||| Sbjct 13269934 CCACCACGGAGGCGAAGCACCAGGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGGCT 13269875 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| || |||| ||||| || ||| | || | || |||||||||||||| Sbjct 13269874 AGGGTTCGGCCGTCCTCCAGCTGTTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 13269815 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || ||||| || || |||| || | ||||| || || || || Sbjct 13269814 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCGATCGTGTCAGATGATTCAACC 13269755 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | || || || ||||| || || || ||||| |||||| Sbjct 13269754 TCTAGGGTTATGGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCATC 13269707 >seq42 Length=30274277 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||||||||| ||||| || |||||| | || | ||| || | || Sbjct 11482053 TGAAGGGTTGATTCCTTCTGGATGTTGTAATCGGCCAATGTCCGACCATCTTCGAGCTGC 11481994 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || |||| | | |||||||| || || || || || || || || |||||| Sbjct 11481993 TTACCAGCAAATATGAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATTTTT 11481934 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||| | || | || | |||||| ||| ||| ||||| || || | ||||| || || Sbjct 11481933 GCTTTAA-CGTTATCAATGGTGTCTGAACTCTCAACTTCAAGTGTGATAGTTTTTCCAGT 11481875 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||||||||||||| Sbjct 11481874 GAGGGTCTTCACAAAAATTTGCAT 11481851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451992425373720