Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq42 105 8e-18 seq51 86.0 8e-12 >seq42 Length=30274277 Score = 105 bits (116), Expect = 8e-18 Identities = 179/257 (70%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||| || ||||| | ||||| ||||| | || ||||||||||| || ||| Sbjct 25646965 CCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGTTAATCCCGGCATGAGACCGCGTTTC 25647024 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| |||| || || || ||||||||||| || ||||| || ||||| Sbjct 25647025 TTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAGATGCCTTCCACGCAGGCGAAT 25647084 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 || | || || |||||||||| ||| || | ||| | |||||||| Sbjct 25647085 GCGAGCAGGCGTTCGGCAAAGGTTTCGGA---GCCGTCGATCCATCGGAGAGCCCACTGG 25647141 Query 127718 GCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCT--G 127775 || || ||| | | ||| |||| ||| | ||| || | |||||| ||| |||||| Sbjct 25647142 GCTTTCTTCGCTACACAGGGGATGGTATCGATTGCGTGAAAGAG--CCTGTTTTTCTCCT 25647199 Query 127776 ATGGATCTTTGATGTAC 127792 |||||| ||||| ||| Sbjct 25647200 TTGGATCCTTGATATAC 25647216 >seq51 Length=29360087 Score = 86.0 bits (94), Expect = 8e-12 Identities = 188/282 (67%), Gaps = 10/282 (4%) Strand=Plus/Plus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGG 12850 ||| ||||||||||| ||||| || |||||||||||||| || | ||||||||| | Sbjct 1216650 GAATCCATCCATCTCTGTCAACAGCTGATTGATGGTTTGCTCTCTCTCATCATTCCCACC 1216709 Query 12851 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACA 12910 | ||| || | | ||| | || || || |||||||| |||||||| || || || Sbjct 1216710 TCCAAGACCTGCCCCTCTCTGCCTCCCCACTGCATCAATTTCATCAATGAACACAATGCA 1216769 Query 12911 CGG-----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 12965 || |||||||| || ||||| | || || ||||| || || || Sbjct 1216770 GGGTGCCTTTGATTTT-----GCCTTCTCAAACAAGTCCCGGACTCTGGATGCTCCCACT 1216824 Query 12966 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCA 13025 || ||||||| || || || | | ||| | || || ||| || || | ||| Sbjct 1216825 CCTACAAACAATTCAACGAATTCAGAGGCTGCGCACGAGAAGAATGGCACACCTGCTTCT 1216884 Query 13026 CCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067 || || | |||| ||| || |||||||| || || || ||| Sbjct 1216885 CCGGCCACTGCTCTGGCCAGTAGGGTCTTGCCGGTTCCGGGT 1216926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613492575522120