Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq12 129 7e-25 seq49 118 1e-21 seq23 114 1e-20 seq57 109 6e-19 seq42 82.4 9e-11 >seq12 Length=21026613 Score = 129 bits (142), Expect = 7e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| ||||| | || | |||||| || | ||| |||||| ||||| |||||||| | Sbjct 4557234 GCCACCTCTGAGGCGGAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGC 4557175 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 ||| || || |||| ||||||||||| ||||||||||| | ||| |||||||| | || Sbjct 4557174 TAGGGTCCGGCCGTCCTCGAGCTGCTTCCCGGCGAATATGAGGCGTTGCTGGTCCGGAGG 4557115 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||||||||| |||||| ||| | | | | ||||| || ||||| Sbjct 4557114 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAGGACTCCAC 4557055 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || | || ||||| || ||||| || ||||| || ||||| ||||| || Sbjct 4557054 CTCAAGGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 4557004 >seq49 Length=17126926 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| |||||||||||||||| ||| || || |||| || Sbjct 13269917 CACCAGGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGGCTAGGGTTCGGCCGTCCTC 13269858 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||| ||||| ||||| || | |||||||||||| | ||| | || |||||||| Sbjct 13269857 CAGCTGTTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTG 13269798 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| | | | |||||| ||||| || || | || ||||| || Sbjct 13269797 GATCTTGGCCTTGACATTATCGATCGTGTCAGATGATTCAACCTCTAGGGTTATGGTCTT 13269738 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||||| || || || || || || ||||| || Sbjct 13269737 CCCCGTTAGGGTCTTCACGAAAATCTGCATCTT 13269705 >seq23 Length=22385789 Score = 114 bits (126), Expect = 1e-20 Identities = 156/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| ||||| |||||||||| ||| || || |||| || Sbjct 4579870 CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTC 4579811 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||| || || ||||| || | ||||||||||| | || | || ||||||||| Sbjct 4579810 CAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTG 4579751 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 |||||| |||| || | | | | ||||| |||||| || || | || ||||| | Sbjct 4579750 GATCTTAGCCTTG-GCATTGTCGATGGTGTCAGACGATTCAACCTCTAAGGTTATGGTCT 4579692 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | ||||| || ||||| || ||||| ||||| ||| Sbjct 4579691 TCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTG 4579657 >seq57 Length=24021853 Score = 109 bits (120), Expect = 6e-19 Identities = 144/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||||||||| |||| || || ||| | || ||||||||||||||||| || Sbjct 5916297 CTCTTTCTGGATATTGTAATCGGCAAGGGTTCGCCCATCTTCGAGCTGCTTGCCGGCAAA 5916238 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | | |||||||||| |||||| ||| | ||| Sbjct 5916237 GATCAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTGGATCTT-GGCTTTAACGT 5916179 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | |||||| ||| ||| || |||| || ||||| || || || || |||| Sbjct 5916178 TGTCGATCGTGTCTGAGCT---TTCGACTTCCAAAGTAATGGTCTTTCCTGTAAGAGTTT 5916122 Query 46578 TAACAAAGATTTGCAT 46593 | ||||| || ||||| Sbjct 5916121 TCACAAATATCTGCAT 5916106 Score = 107 bits (118), Expect = 2e-18 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| | ||||| || |||||| ||||| |||||||||| || || || | Sbjct 5891120 ACGAAGCACTAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTTCGACC 5891061 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||| || ||||||||||||| | |||||| || | || | || ||| || Sbjct 5891060 GTCTTCAAGCTGTTTCCCGGCGAATATCAGCCTCTGCTGATCCGGTGGGATGCCCTCTTT 5891001 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCG---CTCGATTCCACATCCACCGT 46554 ||| |||||| ||||| | | | ||||||| ||| || || || | || Sbjct 5891000 GTCTTGGATCTTGGCCTTGACATTATCGATCGTGTCGGAGCTC---TCAACCTCTAGGGT 5890944 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || || || || |||||||||||||| ||||| Sbjct 5890943 TATGGTCTTTCCGGTAAGTGTTTTAACAAAGATCTGCAT 5890905 Score = 104 bits (114), Expect = 3e-17 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| | ||||| || |||||| ||||| |||||||||| ||||| || | Sbjct 5916093 ACGAAGCACTAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTTCGACC 5916034 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||| ||||||||||| | | |||||| || | || | || ||| || Sbjct 5916033 GTCTTCAAGCTGCTTCCCGGCGAATATTAGCCTCTGCTGATCCGGTGGGATGCCCTCTTT 5915974 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 ||| |||||| ||||| | | | |||||| |||| || || || | || Sbjct 5915973 GTCTTGGATCTTGGCCTTGACATTATCGATCGTGTCCGAGCTC---TCAACCTCTAGGGT 5915917 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || ||||| |||||||| ||||| Sbjct 5915916 TATCGTCTTTCCGGTAAGAGTTTTGACAAAGATCTGCAT 5915878 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| || | ||| |||||| || || ||||| || | ||||| ||| | Sbjct 5917005 ACGAAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTTCGCCC 5916946 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||||||||| |||| | ||||||||| | || | | ||||| Sbjct 5916945 ATCCTCAAGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGTGGAATCCCTTCCTT 5916886 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| |||||| ||| ||| | | | |||||| ||| || |||| |||| Sbjct 5916885 GTCCTGAATCTTC-GCTTTCACGTTGTCAATGGTGTCGGAGCTTTCGACCTCCAGGGTGA 5916827 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || || || ||||| ||||| || ||||| Sbjct 5916826 TGGTCTTTCCGGTGAGGGTTTTCACAAAAATCTGCAT 5916790 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | || || | | | || || |||||||| |||||||| Sbjct 5917209 CTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCGGCGAA 5917150 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | |||||| || | || | | |||||||||| ||||| |||| | Sbjct 5917149 GATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGAATCTTTGCTTTGACATT 5917090 Query 46522 CGCCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | |||||| ||| ||||| |||| ||||||||| || || ||||| || || Sbjct 5917089 GTCAATGGTGTCGGAACTC---TCCACCTCCAGCGTGATGGTCTTTCCAGTCAGTGTCTT 5917033 Query 46579 AACAAAGATTTGCAT 46593 || ||||||||||| Sbjct 5917032 CACGAAGATTTGCAT 5917018 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||||||||| |||| || || ||| | || ||||||||||||||||| || Sbjct 5891324 CTCTTTCTGGATATTGTAATCGGCAAGGGTTCGCCCATCTTCGAGCTGCTTGCCGGCAAA 5891265 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | | |||||||||| |||||| ||| | | | Sbjct 5891264 GATCAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTGGATCTT-GGCTTTAACAT 5891206 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| ||| || |||| || ||||| || || || || || || | Sbjct 5891205 TGTCGATGGTGTCGGAGCTTTCGACTTCCAAAGTAATGGTCTTTCCTGTAAGAGTCTTCA 5891146 Query 46581 CAAAGATTTGCAT 46593 |||| || ||||| Sbjct 5891145 CAAATATCTGCAT 5891133 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | || || | | | || || |||||||| || ||||| Sbjct 5892008 CTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCAGCGAA 5891949 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | |||||| || | || | | ||||||||| ||||| || | | Sbjct 5891948 GATCAATCTCTGCTGATCCGGTGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACATT 5891889 Query 46522 CGCCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | |||||| ||| ||||| |||| ||||||||| || || ||||| || || Sbjct 5891888 ATCAATGGTGTCGGAACTC---TCCACCTCCAGCGTGATGGTCTTCCCAGTCAGAGTCTT 5891832 Query 46579 AACAAAGATTTGCAT 46593 || ||||||||||| Sbjct 5891831 CACGAAGATTTGCAT 5891817 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || || ||||| || | ||||| || |||| || |||||||| || ||||| Sbjct 5891780 CTCTTTCTGAATGTTGTAATCCGCGAGAGTTCGGCCGTCTTCCAGCTGCTTCCCCGCGAA 5891721 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | || |||||| ||| |||||| || | ||| Sbjct 5891720 AATCAGCCTCTGCTGGTCCGGTGGAATGCCCTCCTTATCCTGGATCTTAGCTTTCA-CGT 5891662 Query 46522 CGCCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | || | ||||| ||| || || | || || || || || || || ||||||| Sbjct 5891661 TGTCAATGGTGTCGGAGCTTTCGACCTCTAGAGTAATTGTCTTTCCGGTTAGAGTTTTAA 5891602 Query 46581 CAAAGATTTGCATT 46594 |||| || |||||| Sbjct 5891601 CAAAAATCTGCATT 5891588 >seq42 Length=30274277 Score = 82.4 bits (90), Expect = 9e-11 Identities = 158/232 (68%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||||||||| | |||| || | || ||| || ||||| || || || | Sbjct 11334522 TGCCGCCTCTTAAACGGAGAACCAAGTGAAGGGTGGACTCTTTCTGGATGTTATAATCAG 11334581 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || | || ||||||||||| || || ||||| | | ||||||||| | | Sbjct 11334582 CCAATGTCCGGCCATCCTCGAGCTGCTTACCAGCAAATATAAGCCTCTGCTGGTCTGGGG 11334641 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | | |||||||||| ||| ||| |||| | | | ||||| |||| | Sbjct 11334642 GAATACCCTCCTTGTCCTGGATTTTCGCTTTGACATTATCAATGGTGTCTGAGCTC---T 11334698 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || | ||||| ||||| || || || || || ||||| |||||||| Sbjct 11334699 CAACTTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 11334750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565224926129640