Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq42 96.9 2e-15 seq57 89.7 4e-13 >seq42 Length=30274277 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 |||||| |||||||| || || |||||| ||| |||| || | ||||| || |||| Sbjct 11482498 TTCTTTCTGTATATTGTAGTCAGCCAAAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAA 11482439 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTG--TTTA-AT 39644 || | | ||| || || | || | |||||| ||||| | | |||||| || | || Sbjct 11482438 GATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCCTTGTC-CTGAATTTTTGCCTTGACAT 11482380 Query 39645 CGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTT 39704 ||| | |||||||| ||| || || || | ||| ||||||||||| ||||| || || Sbjct 11482379 TGTCAAT--TGTGTCTGAGCTCTCAACTTCAAGAGTGATTGTTTTACCAGTTAAGGTCTT 11482322 Query 39705 TACGAAGATCTGCAT 39719 || || |||||||| Sbjct 11482321 CACAAATATCTGCAT 11482307 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 39517 TGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGT 39576 |||| ||| |||||| ||||| || || || |||||| ||| |||| || | ||| Sbjct 11333864 TGCAGCGTGGATTCTTTCTGTATGTTGTAGTCAGCCAAAGTGCGGCCATCCTCAAGCTGT 11333923 Query 39577 TTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTT 39636 || || |||| || | | ||| || || | || | |||||| ||||| |||||| Sbjct 11333924 TTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATTTTT 11333983 Query 39637 TGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTT 39696 || | | | | |||||||| ||| || || || | ||| ||||||||||| ||| Sbjct 11333984 GCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACTTCAAGAGTGATTGTTTTACCAGTT 11334043 Query 39697 AAAGTTTTTACGAAGATCTGCAT 39719 || || || || || |||||||| Sbjct 11334044 AAGGTCTTCACAAAAATCTGCAT 11334066 >seq57 Length=24021853 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || || | ||| || ||||| || | ||| ||||| || ||||| |||| Sbjct 5916336 CATC-CCTCCACGAAGACGGAGGACCAAGTGAAGAGTTGACTCTTTCTGGATATTGTAAT 5916278 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 |||| | || |||| || | || || ||| |||| || | | |||||| |||| Sbjct 5916277 CGGCAAGGGTTCGCCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCG 5916218 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTT 39666 || | || || ||||| || || ||||| ||| | | | ||||||| |||| Sbjct 5916217 GTGGAATACCCTCCTTGTCCTGGATCTTGGCTTTAA-CGTTGTCGATCGTGTCTGAGCTT 5916159 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || ||||||||||| || || || || | |||||| || || |||||||| Sbjct 5916158 TCGACTTCCAAAGTAATGGTCTTTCCTGTAAGAGTTTTCACAAATATCTGCAT 5916106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347361526587731