Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq35 125 9e-24 seq42 95.1 2e-14 seq51 91.5 2e-13 >seq35 Length=22702307 Score = 125 bits (138), Expect = 9e-24 Identities = 315/466 (68%), Gaps = 22/466 (5%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||| || || | | || || || || || |||| ||||| |||||| || ||| Sbjct 2305966 TCAAGAATGTCTGCCCTGTTAGTGGCTGCAATAACAATTATACCAGTGTTTCCTT--CAA 2305909 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 |||||||||| || |||||||||||||||| |||||||||| ||||||||| || | Sbjct 2305908 AACCATCCATTTCAGTCAAAAGCTGGTTAAGTGTTTGTTCCCTTTCATCATTTCCT--CC 2305851 Query 16036 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | | | |||| | | ||| || || |||||||| ||||||| || || ||||| Sbjct 2305850 TCCAATTCCAGTTCCTCTTTGGCGCCCAACAGCATCAATTTCATCAACAAATACAATGCA 2305791 Query 16094 TGGTTGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 16150 || ||| | | | | ||| ||| ||||| || ||| || | || || ||||| Sbjct 2305790 GGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACG--CACTCTAGATGCACCAACACC 2305734 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 16209 |||||||||||| ||||| | | | | | || | || || || ||| | ||||| Sbjct 2305733 AACAAACATCTCAACAAACTCAGAACCTG-AGATAGAGAAAAATGGAACACCTGCTTCAC 2305675 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269 | ||||| || || || |||||||| || || |||||| || | || || ||| Sbjct 2305674 CAGCAATTGCCTTCGCTAGCAGAGTCTTCCCAGTTCCTGGCGGGCCAACAAGAAGAACAC 2305615 Query 16270 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 16329 || || || || ||| | || | ||||||| || | || ||||| ||||| | Sbjct 2305614 CTTTAGGGATGCGAGCTCCAACTGCAGTGAATCTCTCGGGCTTTTTCAGAAACTCCACTA 2305555 Query 16330 TCTCTTCC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 ||||| || || | ||| || | || | ||| ||||||| Sbjct 2305554 ---CTTCCATGAAATCTTGTTTTGCTTCATCTACCCCAGCAACATC 2305512 >seq42 Length=30274277 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 ||||||| || || || ||||||| || || || || || ||||||||||| || || Sbjct 25647106 CCTTTGCCGAACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATCTTCTTCTCCGGAAGCT 25647047 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 ||||| | || | ||||| ||||| || ||||||||||| || | ||||| || | Sbjct 25647046 TCTGCTCGATATTCTGGCTAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCAAATG 25646987 Query 102292 AGCTTATCTCTCGTGACGAGGG 102313 || | ||||| || |||||||| Sbjct 25646986 AGTTAATCTCGCGAGACGAGGG 25646965 >seq51 Length=29360087 Score = 91.5 bits (100), Expect = 2e-13 Identities = 188/280 (67%), Gaps = 10/280 (4%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || ||||||||||||||||| ||||| || || ||||| || | ||||||||| | Sbjct 1216651 AATCCATCCATCTCTGTCAACAGCTGATTGATGGTTTGCTCTCTCTCATCATTCCCACCT 1216710 Query 16035 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 | ||| || | | ||| | ||||| |||||||| ||||||||||| || ||||| Sbjct 1216711 CCAAGACCTGCCCCTCTCTGCCTCCCCACTGCATCAATTTCATCAATGAACACAATGCAG 1216770 Query 16095 GG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 || |||||||| || ||||| | ||||| || | || ||||| | Sbjct 1216771 GGTGCCTTTGATTTT-----GCCTTCTCAAACAAGTCCCGGACTCTGGATGCTCCCACTC 1216825 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209 | ||||||| || || || | | ||| | || || ||| || ||| | ||| | Sbjct 1216826 CTACAAACAATTCAACGAATTCAGAGGCTGCGCACGAGAAGAATGGCACACCTGCTTCTC 1216885 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | || | |||| ||| || || ||||| || || || || Sbjct 1216886 CGGCCACTGCTCTGGCCAGTAGGGTCTTGCCGGTTCCGGG 1216925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620727603053040