Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq35 123 3e-23 seq12 100 3e-16 seq42 95.1 1e-14 seq51 91.5 2e-13 >seq35 Length=22702307 Score = 123 bits (136), Expect = 3e-23 Identities = 310/463 (67%), Gaps = 16/463 (3%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9282 ||||| || || | | || || || || || |||| ||||| |||||| || ||| Sbjct 2305966 TCAAGAATGTCTGCCCTGTTAGTGGCTGCAATAACAATTATACCAGTGTTTCCTT--CAA 2305909 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9342 |||||||||| || |||||||| ||||||| |||||||||| ||||||||| || | Sbjct 2305908 AACCATCCATTTCAGTCAAAAGCTGGTTAAGTGTTTGTTCCCTTTCATCATTTCCT--CC 2305851 Query 9343 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | | | |||| | | ||| || || |||||||| ||||||| || ||||| || Sbjct 2305850 TCCAATTCCAGTTCCTCTTTGGCGCCCAACAGCATCAATTTCATCAACAAATACAATGCA 2305791 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || ||| || ||| | | || ||||| || || || || || |||||||| Sbjct 2305790 GGGAGCATTCTCCTTGGCCTTCTTGAAAAGATCACGCACTCTAGATGCACCAACACCAAC 2305731 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 ||||||||| ||||| | | | | | || | || || || ||| | |||||| | Sbjct 2305730 AAACATCTCAACAAACTCAGAACCTG-AGATAGAGAAAAATGGAACACCTGCTTCACCAG 2305672 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 |||| || || || |||||||| || || |||||| || | || || |||| Sbjct 2305671 CAATTGCCTTCGCTAGCAGAGTCTTCCCAGTTCCTGGCGGGCCAACAAGAAGAACACCTT 2305612 Query 9580 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCT 9639 || || || ||| | || | ||||||| || | || ||||| ||||| | Sbjct 2305611 TAGGGATGCGAGCTCCAACTGCAGTGAATCTCTCGGGCTTTTTCAGAAACTCCACTA--- 2305555 Query 9640 CTTCC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 ||||| || || | ||| || | || | ||| ||||||| Sbjct 2305554 CTTCCATGAAATCTTGTTTTGCTTCATCTACCCCAGCAACATC 2305512 >seq12 Length=21026613 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || || || ||||||||||||||||| ||||| || ||||| | |||||||| | Sbjct 18116819 GGTAGAGCAATTGATGCCAAATTGCATACAGCAGTTTCATCAGCACTGGTGTACTCAATG 18116878 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || ||||| ||||| ||| ||||| || |||| ||||| ||| ||||| ||||| Sbjct 18116879 ATCTCAGTACATAAGTTTGAAGATTTAATGGTACCCAGATTCTGTTGATTACTTTTTTTA 18116938 Query 106577 TTGCACGCATCCT 106589 ||||| | ||||| Sbjct 18116939 TTGCAAGAATCCT 18116951 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || |||||||| || |||||||| || || |||| || ||| ||||| || || Sbjct 18118181 TGGGGCCTTGGTGTTCCTGCATTGAAAAGAGTGGGTGAAGCATGAGTGAACCAACGCTGA 18118240 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 ||||| | |||||| | | ||||||||||||| ||| ||| || || | | Sbjct 18118241 GACATTAAATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGAATTCCAACAGAA 18118300 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAG 107347 || | ||| ||||||| || || |||| | | | || | | | | || ||| Sbjct 18118301 ACTCTCATCAACATGTGCTGAGGCCTTTCTACAACCTTCCCTTGAATCTTCAGGAGGTAG 18118360 Query 107348 CTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | ||||||||||||||| |||||||||| || ||||| ||||||| Sbjct 18118361 GACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAATCAAAGTCCCG 18118407 >seq42 Length=30274277 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 ||||| ||||| || || | ||||||||||| || || ||||||||||| || ||| Sbjct 25646965 CCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGTTAATCCCGGCATGAGACCGCGTTTC 25647024 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | ||| | || | |||||| |||||||||||||| || ||||| || || || Sbjct 25647025 TTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAGATGCCTTCCACGCAGGCGAAT 25647084 Query 117412 GCAAAAAGGCGCTCGGCGAAGG 117433 || | ||||| ||||| |||| Sbjct 25647085 GCGAGCAGGCGTTCGGCAAAGG 25647106 >seq51 Length=29360087 Score = 91.5 bits (100), Expect = 2e-13 Identities = 188/280 (67%), Gaps = 10/280 (4%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || ||||||||||||||||| || || || || ||||| || | ||||||||| | Sbjct 1216651 AATCCATCCATCTCTGTCAACAGCTGATTGATGGTTTGCTCTCTCTCATCATTCCCACCT 1216710 Query 9342 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 | ||| || | | ||| | ||||| |||||||| ||||||||||| ||||| || Sbjct 1216711 CCAAGACCTGCCCCTCTCTGCCTCCCCACTGCATCAATTTCATCAATGAACACAATGCAG 1216770 Query 9402 GG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 || |||||||| || | ||||| | || || || || || ||||| | Sbjct 1216771 GGTGCCTTTGATTTT-----GCCTTCTCAAACAAGTCCCGGACTCTGGATGCTCCCACTC 1216825 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9516 | ||||||| || || || | | ||| | || || ||| || ||| | ||| | Sbjct 1216826 CTACAAACAATTCAACGAATTCAGAGGCTGCGCACGAGAAGAATGGCACACCTGCTTCTC 1216885 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | || | |||| ||| || || ||||| || || || || Sbjct 1216886 CGGCCACTGCTCTGGCCAGTAGGGTCTTGCCGGTTCCGGG 1216925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589966736332680