Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq42 116 3e-21 seq57 111 1e-19 >seq42 Length=30274277 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||| || ||||| |||||||||| || | ||| | || ||| Sbjct 11520497 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGTGTCCGACCATCCTCC 11520438 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| || ||||| ||||| | ||| ||||| | || | ||||||||||| | Sbjct 11520437 AACTGCTTCCCTGCAAAGATCAGCCTCTGCTGATCTGGAGGGATCCCCTCCTTGTCCTGA 11520378 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | | | ||||| ||||||||| | || ||||| ||| Sbjct 11520377 ATTTTGGCCTTCACATTATCTATGGTGTCTGAGCTCTCCACCTCTAGTGTGATCGTCTTT 11520318 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||| || || ||||| |||||||| Sbjct 11520317 CCCGTCAGGGTCTTCACAAATATCTGCAT 11520289 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || ||||| |||||||||| ||| | ||| | || ||| Sbjct 11326744 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTCCGACCATCCTCC 11326803 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| || ||||| || || | ||| ||||| | || | || |||||||| | Sbjct 11326804 AACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCTGA 11326863 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || ||| || ||| | | | || ||||| ||| ||||| | ||||| || ||| Sbjct 11326864 ATTTTTGCCTTCACATTATCTATAGTGTCTGAGCTCTCAACCTCTAGTGTAATTGTCTTT 11326923 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||||| || || ||||| ||||||||| Sbjct 11326924 CCCGTCAGGGTCTTCACAAATATCTGCATC 11326953 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| |||| || | ||||| || || ||| |||||| || || || ||||||| Sbjct 11334523 GCCGCCTCTTAAACGGAGAACCAAGTGAAGGGTGGACTCTTTCTGGATGTTATAATCAGC 11334582 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | || | || || | ||||||||| |||||||| || | ||| || || | ||| Sbjct 11334583 CAATGTCCGGCCATCCTCGAGCTGCTTACCAGCAAATATAAGCCTCTGCTGGTCTGGGGG 11334642 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||||| || || ||| ||| | | | | ||||| ||| || Sbjct 11334643 AATACCCTCCTTGTCCTGGATTTTCGCTTTGACATTATCAATGGTGTCTGAGCTCTCAAC 11334702 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || |||||||| || | || || |||||||| ||||| Sbjct 11334703 TTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 11334750 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || |||||||||||||| | | || | || || | |||||| || ||||| Sbjct 11482725 TCCTTCTGAATATTGTAATCTACCAAGGTCCGCCCATCCTCTAGCTGCTTTCCAGCAAAG 11482666 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| ||||| | || | |||||||||||| ||||||| || ||| | Sbjct 11482665 ATGAGCCTCTGCTGATCTGGAGGGATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTA 11482606 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||||||||| | || |||||||| || |||| || || ||| Sbjct 11482605 TCTATGGTGTCAGAGCTCTCCACCTCTAGTGTGATCGTTTTACCTGTCAGGGTCTTCACA 11482546 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 11482545 AAAATCTGCAT 11482535 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || |||||||||||||| | | | || | || || | |||||| || |||||| Sbjct 11333648 TCCTTCTGAATATTGTAATCTGCCAAGGTCCGCCCATCCTCTAGCTGCTTTCCAGCAAAT 11333707 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| ||||| | || | ||||||||||| ||||||| || ||| | Sbjct 11333708 ATGAGCCTCTGCTGATCTGGAGGGATACCCTCCTTGTCTTGAATCTTTGCCTTCACATTA 11333767 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||||||||| | || || ||||| || |||| || || ||| Sbjct 11333768 TCTATGGTGTCAGAGCTCTCCACCTCAAGTGTGATAGTTTTACCTGTCAGGGTCTTCACA 11333827 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 11333828 AATATCTGCAT 11333838 >seq57 Length=24021853 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || |||||||||||| |||||||| | || |||| Sbjct 5916779 AGACGGAGCACCAAGTGCAGAGTTGACTCTTTTTGAATGTTGTAATCGGCGAGGGTTCGG 5916720 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || ||||| | ||| || || | |||| ||||||| Sbjct 5916719 CCGTCTTCCAGCTGCTTTCCGGCGAAAATCAGCCTCTGCTGGTCTGGTGGAATGCCCTCC 5916660 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| ||| || | | | || || ||| ||||||| || Sbjct 5916659 TTATCCTGGATCTTCGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCGACCTCCAGGGTG 5916600 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || ||||| || | ||||||||||||||||||||| Sbjct 5916599 ATGGTCTTTCCGGTGAGGGTTTTTACAAAAATCTGCATC 5916561 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || |||||| || ||||||||||| | || |||| | || || Sbjct 5916314 ACCAAGTGAAGAGTTGACTCTTTCTGGATATTGTAATCGGCAAGGGTTCGCCCATCTTCG 5916255 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| |||||||| ||||| | ||| || |||| |||| ||||||||||| Sbjct 5916254 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTGG 5916195 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| || | | | ||||| || || |||| ||||| || ||| Sbjct 5916194 ATCTTGGCTTTAACGTTGTCGATCGTGTCTGAGCTTTCGACTTCCAAAGTAATGGTCTTT 5916135 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || | |||||| ||||| ||||||||| Sbjct 5916134 CCTGTAAGAGTTTTCACAAATATCTGCATC 5916105 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || ||||| |||||| || || ||||| |||| || |||| Sbjct 5891578 AGACGGAGCACCAAGTGCAGCGTCGACTCTTTCTGGATGTTGTAGTCAGCGAGGGTTCGG 5891519 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||||||||| || || ||||| | ||| || |||| |||| ||||||| Sbjct 5891518 CCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTCCGGTGGAATGCCCTCC 5891459 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || || ||||||| || Sbjct 5891458 TTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCGACCTCCAGGGTG 5891399 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || ||||| || | ||||| ||||||||||||||| Sbjct 5891398 ATGGTCTTTCCGGTGAGGGTTTTCACAAAAATCTGCATC 5891360 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || ||||| |||||||||| ||| |||| Sbjct 5917007 AGACGAAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTTCGC 5916948 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || ||||||| ||| || || | |||| || ||| Sbjct 5916947 CCATCCTCAAGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGTGGAATCCCTTCC 5916888 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| || | | | || || || ||||||| || Sbjct 5916887 TTGTCCTGAATCTTCGCTTTCACGTTGTCAATGGTGTCGGAGCTTTCGACCTCCAGGGTG 5916828 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || ||||| || | ||||| ||||||||||||||| Sbjct 5916827 ATGGTCTTTCCGGTGAGGGTTTTCACAAAAATCTGCATC 5916789 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || |||||| || ||||||||||| | || |||| | || || Sbjct 5891341 ACCAAGTGAAGAGTTGACTCTTTCTGGATATTGTAATCGGCAAGGGTTCGCCCATCTTCG 5891282 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| |||||||| ||||| | ||| || |||| |||| ||||||||||| Sbjct 5891281 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTGG 5891222 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| ||| | | | || || || || |||| ||||| || ||| Sbjct 5891221 ATCTTGGCTTTAACATTGTCGATGGTGTCGGAGCTTTCGACTTCCAAAGTAATGGTCTTT 5891162 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || | ||| || ||||| ||||||||| Sbjct 5891161 CCTGTAAGAGTCTTCACAAATATCTGCATC 5891132 Score = 86.0 bits (94), Expect = 5e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTT 48670 || |||| |||||| ||||| || ||||| | ||| ||||||| ||||| | |||||||| Sbjct 5917172 TCTTCCAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGATCCGGTGGGATC-CCCTCCTT 5917114 Query 48671 GTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAAT 48730 ||| ||||||| ||| ||| | | | || || ||||||||||| ||| || Sbjct 5917113 GTCCTGAATCTTTGCTTTGACATTGTCAATGGTGTCGGAACTCTCCACCTCCAGCGTGAT 5917054 Query 48731 CGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| |||| || || || || || ||||| Sbjct 5917053 GGTCTTTCCAGTCAGTGTCTTCACGAAGATTTGCAT 5917018 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || || || ||||| || | || | | | || |||| ||| Sbjct 5892020 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTG 5891961 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCT 48681 ||| || || || |||| || ||| ||||||| ||||| | || |||||||| ||||| Sbjct 5891960 CTTCCCAGCGAAGATCAATCTCTGCTGATCCGGTGGGATC-CCTTCCTTGTCCTGAATCT 5891902 Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741 || ||| ||| | | | | || || ||||||||||| ||| || || || || | Sbjct 5891901 TTGCTTTCACATTATCAATGGTGTCGGAACTCTCCACCTCCAGCGTGATGGTCTTCCCAG 5891842 Query 48742 TCAAAGTTTTTACAAAAATCTGCAT 48766 ||| ||| || || || || ||||| Sbjct 5891841 TCAGAGTCTTCACGAAGATTTGCAT 5891817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380928746414961