Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq42 105 6e-18 >seq42 Length=30274277 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||||||||||||||| || | || || || ||||| || ||| ||| || Sbjct 11327181 AATGCAAATATTTGTAAAGACGCTGACCGGGAAGACCATCACTCTTGAAGTGGAGAGCTC 11327122 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | ||| ||| ||| ||||| ||||| | ||| |||||| Sbjct 11327121 TGATACAATCGACAATGTGAAGGCAAAGATCCAAGACAAGGAGGGTATCCCCCCAGATCA 11327062 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||||| || ||||| | || ||| | ||| |||| ||||| || Sbjct 11327061 GCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTACAA 11327002 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||| ||||| || || ||| |||| | | | || |||||||| Sbjct 11327001 CATTCAAAAGGAATCCACCCTTCACCTGGTTCTTCGCCTTCGTGGAGGGAT 11326951 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||||||||| || ||| | || || || ||||| ||| ||| || || Sbjct 11327637 AATGCAAATATTTGTTAAGACACTCACTGGAAAGACCATCACCCTTGAAGTTGAGAGCTC 11327578 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | | || | ||| |||||| ||||| || ||| | ||| ||||| Sbjct 11327577 TGATACGATTGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGATCA 11327518 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || || | || ||||| || || || | || ||| | ||| ||||||||||||| Sbjct 11327517 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCCGATTATAA 11327458 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||| ||||| || || || ||| |||| Sbjct 11327457 CATTCAGAAAGAGTCCACACTCCACCTGGT 11327428 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||||||||| |||||| |||| || || ||||| || ||| || ||| Sbjct 11334979 AATGCAAATATTTGTCAAAACACTAACTGGAAAGACCATCACACTTGAAGTTGAGAGTTC 11334920 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | | | | ||| ||| ||| ||||| ||||| | || ||| || Sbjct 11334919 AGATACAATTGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCA 11334860 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| ||||||||||| || || || |||| ||| || |||| |||||||| Sbjct 11334859 GCAGAGGCTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGGACATTGGCTGATTATAA 11334800 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| || || || || || || ||| |||| Sbjct 11334799 CATCCAGAAGGAGTCCACCCTTCACTTGGT 11334770 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||||||||| || ||| | || || || ||||| ||| ||| || || Sbjct 11519604 AATGCAAATATTTGTTAAGACACTCACTGGAAAGACCATCACCCTTGAAGTTGAGAGCTC 11519663 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | | || | ||| |||||| ||||| || ||| | ||| ||||| Sbjct 11519664 TGATACGATTGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGATCA 11519723 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || || | || ||||| || || || | || ||| | ||| ||||||||||||| Sbjct 11519724 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCCGATTATAA 11519783 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||| ||||| || || || ||| |||| Sbjct 11519784 CATTCAGAAAGAGTCCACACTCCACCTGGT 11519813 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||||||||||||||| || | || || || ||||| || || ||| || Sbjct 11520060 AATGCAAATATTTGTAAAGACGCTGACCGGGAAGACCATCACTCTTGAGGTGGAGAGCTC 11520119 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | ||| || ||| ||||| ||||| | ||| |||||| Sbjct 11520120 TGACACAATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAGGGTATCCCCCCAGATCA 11520179 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||||| || ||||| | || ||| | ||| |||| ||||| || Sbjct 11520180 GCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTACAA 11520239 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| ||||| ||||| || || ||| |||| Sbjct 11520240 CATACAAAAGGAATCCACCCTTCACCTGGT 11520269 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || | || || |||||||| || ||| || ||| Sbjct 11335206 ATGCAGATCTTTGTTAAGACCCTTACTGGAAAAACCATAACTCTTGAAGTTGAGAGTTCT 11335147 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| ||||||| ||||| ||||| | ||| || || Sbjct 11335146 GATACCATTGACAATGTTAAGGCAAAAATCCAAGACAAGGAGGGTATCCCCCCTGACCAG 11335087 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || | || ||||| || || || | || ||| || ||| |||||||||||||| Sbjct 11335086 CAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAGGATGGTAGGACTTTGGCCGATTATAAC 11335027 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||||| || || || ||| | ||| | | || ||||||| || Sbjct 11335026 ATTCAAAAAGAGTCCACCCTACACCTTGTACTTCGTTTGAGAGGAGGAAT 11334977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425394912927753