Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq35 120 4e-22 seq51 109 7e-19 seq12 104 3e-17 seq42 95.1 1e-14 >seq35 Length=22702307 Score = 120 bits (132), Expect = 4e-22 Identities = 275/412 (67%), Gaps = 4/412 (1%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| || | |||||||||| || | ||| || ||||| ||| Sbjct 2305557 GTGGAGTTTCTGAAAAAGCCCGAGAGATTCACTGCAGTTGGAGCTCGCATCCCTAAAGGT 2305616 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | ||||| | || |||||| || || ||||| || || || || || || ||| Sbjct 2305617 GTTCTTCTTGTTGGCCCGCCAGGAACTGGGAAGACTCTGCTAGCGAAGGCAATTGCTGGT 2305676 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| || ||| ||||| || ||| | | | ||||| ||||||||||||||| Sbjct 2305677 GAAGCAGGTGTTCCATTTTTCTCTATCTCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGT 2305736 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || ||||| || || || ||||| || | | ||| || ||| || || ||| Sbjct 2305737 GTTGGTGCATCTAGAGTGCGTGATCTTTTCAAGAAGGCCAAGGAGAATGCTCCCTGCATT 2305796 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAG 175534 || || ||||||| |||||||| || || ||| | | |||| | | | | || Sbjct 2305797 GTATTTGTTGATGAAATTGATGCTGTTGGGCGCCAAAGAGGAACTGGAATTGGAGG--AG 2305854 Query 175535 CAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACA 175594 |||||| || || ||||||||| |||| || || | || || |||||||| ||||| Sbjct 2305855 GAAATGATGAAAGGGAACAAACACTTAACCAGCTTTTGACTGAAATGGATGGTTTTGAAG 2305914 Query 175595 ATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | ||||| || | |||||||| |||||||| | | || || ||||| Sbjct 2305915 GAAACACTGGTATAATTGTTATTGCAGCCACTAACAGGGCAGACATTCTTGA 2305966 >seq51 Length=29360087 Score = 109 bits (120), Expect = 7e-19 Identities = 192/280 (69%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || || |||||||| || ||| |||| | || || ||| || ||| |||||| Sbjct 1216925 CCCGGAACCGGCAAGACCCTACTGGCCAGAGCAGTGGCCGGAGAAGCAGGTGTGCCATTC 1216866 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || |||| | ||| | | || || || ||||||| || ||||| || || || Sbjct 1216865 TTCTCGTGCGCAGCCTCTGAATTCGTTGAATTGTTTGTAGGAGTGGGAGCATCCAGAGTC 1216806 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA-----CCATGTATTGTCTTCATTGATG 175489 || || | ||||| | || |||||||| || || ||||| |||||||||| Sbjct 1216805 CGGGACTTGTTTGAGAAGGC-----AAAATCAAAGGCACCCTGCATTGTGTTCATTGATG 1216751 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAG 175549 | |||||||| ||||| | ||| | | || ||| | | ||||| ||||||| Sbjct 1216750 AAATTGATGCAGTGGGGAGGCAGAGAGGGGCAGGTCTTGGAGGTGGGAATGATGAGAGAG 1216691 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 | ||||| || ||||| || | || ||||||||||| || Sbjct 1216690 AGCAAACCATCAATCAGCTGTTGACAGAGATGGATGGATT 1216651 >seq12 Length=21026613 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187 ||||||| ||||| || |||||||||| ||||||||||||||| | ||| || | | Sbjct 18118407 CGGGACTTTGATTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCCTACCTCCTGAAG 18118348 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 | | || | | | |||| || ||| ||||||| ||| | || | | || || Sbjct 18118347 ATTCAAGGGAAGGTTGTAGAAAGGCCTCAGCACATGTTGATGAGAGTTTCTGTTGGAATT 18118288 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 ||| ||| ||||||||||||| | | |||||| | ||||| || || |||| Sbjct 18118287 CACAAGGATGACATTGATTCTGCTATCAAAACATACCATTTAATGTCTCAGCGTTGGTTC 18118228 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 | ||| || |||| || || |||||||| || |||||||| || || Sbjct 18118227 ACTCATGCTTCACCCACTCTTTTCAATGCAGGAACACCAAGGCCCCA 18118181 >seq42 Length=30274277 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 |||| ||||| ||||| | || || || || ||||| || |||||||||||||| | Sbjct 25647106 CCTTTGCCGAACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATCTTCTTCTCCGGAAGCT 25647047 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 ||||| | || | ||| | ||||| || ||||||||||| || || |||||||||| Sbjct 25647046 TCTGCTCGATATTCTGGCTAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCAAATG 25646987 Query 65189 AACTTATTTCCCGAGATGAGGG 65210 | | || || ||||| ||||| Sbjct 25646986 AGTTAATCTCGCGAGACGAGGG 25646965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596555379272160