Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07]
1,907 sequences; 486,196,837 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq35 120 4e-22
seq51 109 7e-19
seq12 104 3e-17
seq42 95.1 1e-14
>seq35
Length=22702307
Score = 120 bits (132), Expect = 4e-22
Identities = 275/412 (67%), Gaps = 4/412 (1%)
Strand=Plus/Plus
Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296
||||| ||||| || | |||||||||| || | ||| || ||||| |||
Sbjct 2305557 GTGGAGTTTCTGAAAAAGCCCGAGAGATTCACTGCAGTTGGAGCTCGCATCCCTAAAGGT 2305616
Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356
| ||||| | || |||||| || || ||||| || || || || || || |||
Sbjct 2305617 GTTCTTCTTGTTGGCCCGCCAGGAACTGGGAAGACTCTGCTAGCGAAGGCAATTGCTGGT 2305676
Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416
||| || ||| ||||| || ||| | | | ||||| |||||||||||||||
Sbjct 2305677 GAAGCAGGTGTTCCATTTTTCTCTATCTCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGT 2305736
Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476
|| ||||| || || || ||||| || | | ||| || ||| || || |||
Sbjct 2305737 GTTGGTGCATCTAGAGTGCGTGATCTTTTCAAGAAGGCCAAGGAGAATGCTCCCTGCATT 2305796
Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAG 175534
|| || ||||||| |||||||| || || ||| | | |||| | | | | ||
Sbjct 2305797 GTATTTGTTGATGAAATTGATGCTGTTGGGCGCCAAAGAGGAACTGGAATTGGAGG--AG 2305854
Query 175535 CAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACA 175594
|||||| || || ||||||||| |||| || || | || || |||||||| |||||
Sbjct 2305855 GAAATGATGAAAGGGAACAAACACTTAACCAGCTTTTGACTGAAATGGATGGTTTTGAAG 2305914
Query 175595 ATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646
| ||||| || | |||||||| |||||||| | | || || |||||
Sbjct 2305915 GAAACACTGGTATAATTGTTATTGCAGCCACTAACAGGGCAGACATTCTTGA 2305966
>seq51
Length=29360087
Score = 109 bits (120), Expect = 7e-19
Identities = 192/280 (69%), Gaps = 10/280 (4%)
Strand=Plus/Minus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|| || || || |||||||| || ||| |||| | || || ||| || ||| ||||||
Sbjct 1216925 CCCGGAACCGGCAAGACCCTACTGGCCAGAGCAGTGGCCGGAGAAGCAGGTGTGCCATTC 1216866
Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434
|| |||| | ||| | | || || || ||||||| || ||||| || || ||
Sbjct 1216865 TTCTCGTGCGCAGCCTCTGAATTCGTTGAATTGTTTGTAGGAGTGGGAGCATCCAGAGTC 1216806
Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA-----CCATGTATTGTCTTCATTGATG 175489
|| || | ||||| | || |||||||| || || ||||| ||||||||||
Sbjct 1216805 CGGGACTTGTTTGAGAAGGC-----AAAATCAAAGGCACCCTGCATTGTGTTCATTGATG 1216751
Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAG 175549
| |||||||| ||||| | ||| | | || ||| | | ||||| |||||||
Sbjct 1216750 AAATTGATGCAGTGGGGAGGCAGAGAGGGGCAGGTCTTGGAGGTGGGAATGATGAGAGAG 1216691
Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589
| ||||| || ||||| || | || ||||||||||| ||
Sbjct 1216690 AGCAAACCATCAATCAGCTGTTGACAGAGATGGATGGATT 1216651
>seq12
Length=21026613
Score = 104 bits (114), Expect = 3e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187
||||||| ||||| || |||||||||| ||||||||||||||| | ||| || | |
Sbjct 18118407 CGGGACTTTGATTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCCTACCTCCTGAAG 18118348
Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247
| | || | | | |||| || ||| ||||||| ||| | || | | || ||
Sbjct 18118347 ATTCAAGGGAAGGTTGTAGAAAGGCCTCAGCACATGTTGATGAGAGTTTCTGTTGGAATT 18118288
Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307
||| ||| ||||||||||||| | | |||||| | ||||| || || ||||
Sbjct 18118287 CACAAGGATGACATTGATTCTGCTATCAAAACATACCATTTAATGTCTCAGCGTTGGTTC 18118228
Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354
| ||| || |||| || || |||||||| || |||||||| || ||
Sbjct 18118227 ACTCATGCTTCACCCACTCTTTTCAATGCAGGAACACCAAGGCCCCA 18118181
>seq42
Length=30274277
Score = 95.1 bits (104), Expect = 1e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128
|||| ||||| ||||| | || || || || ||||| || |||||||||||||| |
Sbjct 25647106 CCTTTGCCGAACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATCTTCTTCTCCGGAAGCT 25647047
Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188
||||| | || | ||| | ||||| || ||||||||||| || || ||||||||||
Sbjct 25647046 TCTGCTCGATATTCTGGCTAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCAAATG 25646987
Query 65189 AACTTATTTCCCGAGATGAGGG 65210
| | || || ||||| |||||
Sbjct 25646986 AGTTAATCTCGCGAGACGAGGG 25646965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596555379272160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |