Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq42 152 9e-32 >seq42 Length=30274277 Score = 152 bits (168), Expect = 9e-32 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||||||||| || || ||||| || | ||| | |||||| ||| ||| Sbjct 11327401 ATTTGCATTCCACCTCTCAAACGGAGGACCAGGTGGAGTGTGGACTCTTTCTGAATGTTA 11327460 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || |||| || || || ||| || | || ||||| |||||||| || || || ||| Sbjct 11327461 TAATCGGCCAAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGA 11327520 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || |||||||| || ||||| ||||| | |||| ||| ||| ||||| || Sbjct 11327521 TCAGGGGGGATTCCTTCCTTGTCTTGGATTTTCGCCTTTACATTGTCAATCGTATCAGAG 11327580 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||||||| || || || || || || || || || || ||||||||||||||| Sbjct 11327581 CTCTCAACTTCAAGGGTGATGGTCTTTCCAGTGAGTGTCTTAACAAATATTTGCATT 11327637 Score = 152 bits (168), Expect = 9e-32 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||||||||| || || ||||| || | ||| | |||||| ||| ||| Sbjct 11519840 ATTTGCATTCCACCTCTCAAACGGAGGACCAGGTGGAGTGTGGACTCTTTCTGAATGTTA 11519781 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || |||| || || || ||| || | || ||||| |||||||| || || || ||| Sbjct 11519780 TAATCGGCCAAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGA 11519721 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || |||||||| || ||||| ||||| | |||| ||| ||| ||||| || Sbjct 11519720 TCAGGGGGGATTCCTTCCTTGTCTTGGATTTTCGCCTTTACATTGTCAATCGTATCAGAG 11519661 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||||||| || || || || || || || || || || ||||||||||||||| Sbjct 11519660 CTCTCAACTTCAAGGGTGATGGTCTTTCCAGTGAGTGTCTTAACAAATATTTGCATT 11519604 Score = 132 bits (146), Expect = 9e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||||||||| ||||| ||||| || | ||| | |||||| ||| ||| Sbjct 11327629 ATTTGCATTCCACCTCTCAAACGAAGGACCAGGTGGAGTGTGGACTCTTTCTGAATGTTA 11327688 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | || || || ||| || | || ||||| |||||||| || || || || Sbjct 11327689 TAATCTGCCAATGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGG 11327748 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || || || || ||||| ||||| | || | ||| ||| ||||| ||| Sbjct 11327749 TCAGGGGGGATACCCTCCTTGTCTTGGATTTTCGCCTTAACATTGTCAATGGTATCAGAA 11327808 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || |||||||| || || || || ||||| ||||| || ||||| Sbjct 11327809 CTTTCCACTTCAAGGGTTATAGTCTTCCCAGTAAGGGTTTTAACAAAGATCTGCAT 11327864 Score = 129 bits (142), Expect = 1e-24 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||||||||||||||| || || || | ||| | |||||| ||| ||| Sbjct 11519612 ATTTGCATTCCACCTCTCAATCGAAGGACGAGGTGGAGTGTGGACTCTTTCTGAATGTTA 11519553 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | || || || ||| || | || ||||| |||||||| || || || || Sbjct 11519552 TAATCTGCCAAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGG 11519493 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || || || || ||||| ||||| | || | ||| ||| ||||| ||| Sbjct 11519492 TCAGGGGGGATACCCTCCTTGTCTTGGATTTTCGCCTTAACATTGTCAATGGTATCAGAA 11519433 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || |||||||| || || || || || || ||||| || ||||| Sbjct 11519432 CTTTCCACTTCAAGGGTTATAGTCTTCCCAGTAAGGGTCTTAACAAAGATCTGCAT 11519377 Score = 116 bits (128), Expect = 7e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| ||||| | || |||| | ||| |||| || || || ||||| |||| ||| Sbjct 11334113 ATATTGTAGTCAGCCAAAGTTCGACCATCTTCTAGCTGCTTACCAGCAAAGATTAGCCTC 11334172 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || || || || ||||| || || || ||||| | ||| | ||| ||||| Sbjct 11334173 TGCTGGTCGGGTGGAATACCTTCCTTGTCCTGGATTTTTGCTTTCACATTGTCGATAGTG 11334232 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || ||| ||||||||| || || ||||||||||| || || || || |||||||||||| Sbjct 11334233 TCTGAACTCTCAACTTCAAGGGTGATAGTTTTACCAGTAAGGGTCTTCACAAATATTTGC 11334292 Query 193359 AT 193360 || Sbjct 11334293 AT 11334294 Score = 113 bits (124), Expect = 8e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||| | || |||| | ||| |||| || || || ||||| |||| ||| Sbjct 11482260 ATGTTGTAGTCAGCCAAAGTTCGACCATCTTCTAGCTGCTTACCAGCAAAGATTAGCCTC 11482201 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || ||||| || || ||||| || || || ||||| | ||| | ||| |||||| Sbjct 11482200 TGCTGGTCAGGTGGAATACCTTCCTTGTCCTGAATTTTTGCTTTCACATTATCAATAGTG 11482141 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || ||| ||| ||||| || || ||||||||||| || || || || ||||| |||||| Sbjct 11482140 TCTGAACTCTCTACTTCAAGGGTGATAGTTTTACCAGTAAGGGTCTTCACAAAAATTTGC 11482081 Query 193359 AT 193360 || Sbjct 11482080 AT 11482079 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | |||||| || ||||| | ||||| || || |||||| || || | Sbjct 11333611 ACCACCACGGAGTCGAAGAACAAGATGAAGTGTAGATTCCTTCTGAATATTGTAATCTGC 11333670 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || || | ||| |||| || ||||| ||||| || | ||||| ||||| ||||| Sbjct 11333671 CAAGGTCCGCCCATCCTCTAGCTGCTTTCCAGCAAATATGAGCCTCTGCTGATCTGGAGG 11333730 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || || || || ||||| || || | || | ||| || || || || ||| || Sbjct 11333731 GATACCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCTATGGTGTCAGAGCTCTCCAC 11333790 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || |||||||||||||| || || || |||||||| ||||| Sbjct 11333791 CTCAAGTGTGATAGTTTTACCTGTCAGGGTCTTCACAAATATCTGCAT 11333838 Score = 105 bits (116), Expect = 1e-17 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||||||||| || || |||| || | |||| ||| || || || Sbjct 11334287 ATTTGCATGCCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTG 11334346 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | || || | | ||| || | ||||| || ||||| || | ||||| || Sbjct 11334347 TAGTCCGCCAATGTCCGACCATCTTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGG 11334406 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || || || || ||||| | ||| | ||| || || || ||| Sbjct 11334407 TCTGGGGGAATACCCTCCTTGTCCTGGATTTTAGCTTTCACATTATCGATGGTGTCTGAA 11334466 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||| || || |||||||| || || || || || ||||| |||||||| Sbjct 11334467 CTCTCAACTTCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 11334522 Score = 104 bits (114), Expect = 4e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||||||||| || || |||| || | ||| | |||||| || || Sbjct 11481859 AATTTGCATGCCACCTCTCAAACGGAGAACCAAGTGAAGTGTGGACTCTTTCTGGATGTT 11481800 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || | || || | ||| || | || || || |||||||| | ||||| || Sbjct 11481799 ATAATCAGCCAATGTCCGGCCATCCTCAAGCTGCTTACCTGCAAAAATGAGCCTCTGCTG 11481740 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || || || || || || ||||| | ||| | ||| || || || || Sbjct 11481739 GTCTGGGGGAATGCCCTCCTTGTCCTGGATTTTCGCTTTAACATTATCGATGGTGTCTGA 11481680 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||||||| || || || || ||||| || || || || ||||| |||||||| Sbjct 11481679 ACTCTCAACTTCAAGGGTAATGGTCTTACCAGTAAGGGTCTTCACAAAAATTTGCAT 11481623 Score = 96.9 bits (106), Expect = 6e-15 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || |||||||||| || || |||| || | || | ||| || || || Sbjct 11334742 AATTTGCATGCCACCTCTCAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTT 11334801 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || | || || | ||| || | || || || ||||| || | ||||| || Sbjct 11334802 ATAATCAGCCAATGTCCGGCCATCCTCCAGCTGCTTACCAGCAAAGATAAGCCTCTGCTG 11334861 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || || || || || || || || | || | || ||| ||||| || Sbjct 11334862 GTCTGGAGGAATACCCTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCAATTGTATCTGA 11334921 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | ||||||||| || || || || || || ||||| ||||| ||||||||||||||| Sbjct 11334922 ACTCTCAACTTCAAGTGTGATGGTCTTTCCAGTTAGTGTTTTGACAAATATTTGCATT 11334979 Score = 96.9 bits (106), Expect = 6e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | |||||| || ||||| | ||||| || || |||||| || || Sbjct 11482762 ACCACCACGGAGTCGAAGAACAAGATGAAGTGTAGATTCCTTCTGAATATTGTAATCTAC 11482703 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || || | ||| |||| || ||||| ||||| || | ||||| ||||| ||||| Sbjct 11482702 CAAGGTCCGCCCATCCTCTAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGATCTGGAGG 11482643 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || || || || ||||| || || | || | ||| || || || || ||| || Sbjct 11482642 GATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCTATGGTGTCAGAGCTCTCCAC 11482583 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || ||||||||||| || || || ||||| || ||||| Sbjct 11482582 CTCTAGTGTGATCGTTTTACCTGTCAGGGTCTTCACAAAAATCTGCAT 11482535 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||||||||| || || |||| || | || | || || || || Sbjct 11482087 AATTTGCATGCCACCTCTCAAACGGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTT 11482028 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || |||| || || | | ||| || | || || || ||||| || | ||||| || Sbjct 11482027 GTAATCGGCCAATGTCCGACCATCTTCGAGCTGCTTACCAGCAAATATGAGCCTCTGCTG 11481968 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || || || || || || ||||| | ||| | || ||| || || || Sbjct 11481967 GTCTGGGGGGATACCCTCCTTGTCCTGGATTTTTGCTTTAACGTTATCAATGGTGTCTGA 11481908 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||||||| || || |||||||| || || || || || ||||| |||||||| Sbjct 11481907 ACTCTCAACTTCAAGTGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 11481851 Score = 89.7 bits (98), Expect = 9e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||| || ||||| || | ||||| ||||| || || || || || || ||||| || Sbjct 11327035 TGTTTACCAGCAAAGATGAGCCTCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGGATC 11327094 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | || | ||| || ||||| || ||| ||||| ||||| || || || || Sbjct 11327095 TTTGCCTTCACATTGTCGATTGTATCAGAGCTCTCCACTTCAAGAGTGATGGTCTTCCCG 11327154 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| |||||||||||||||||| Sbjct 11327155 GTCAGCGTCTTTACAAATATTTGCATT 11327181 Score = 87.8 bits (96), Expect = 3e-12 Identities = 162/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| |||| || || |||| ||| | || | ||| || ||||| Sbjct 11481631 AATTTGCATGCCACCCCTCAGACGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATT 11481572 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || | | || || | ||| || | || || || ||||| || | ||||| || Sbjct 11481571 GTAATGAGCCAATGTCCGGCCATCCTCCAGCTGCTTACCAGCAAAGATAAGCCTCTGCTG 11481512 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || || || || || || || || | || | ||| | | ||||| || Sbjct 11481511 GTCTGGAGGAATACCCTCCTTGTCCTGGATCTTTGCCTTCACATTGTCAGTTGTATCTGA 11481452 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | ||||||||| || || || || || | || |||||||| ||||||||||||||| Sbjct 11481451 ACTCTCAACTTCAAGTGTGATTGTCTTTCTAGTAAGCGTTTTGACAAATATTTGCATT 11481394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899632954488240