Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq42 116 5e-21 seq57 93.3 6e-14 >seq42 Length=30274277 Score = 116 bits (128), Expect = 5e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| |||| ||| | |||||||| || || || | ||||| || || Sbjct 11327637 AATGCAAATATTTGTTAAGACACTCACTGGAAAGACCATCACCCTTGAAGTTGAGAGCTC 11327578 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| || || || ||||| ||||| || ||||| || || || || || Sbjct 11327577 TGATACGATTGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGATCA 11327518 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||| ||||||| ||| || |||||||| || ||| ||| ||||| | |||||||| Sbjct 11327517 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCCGATTATAA 11327458 Query 156002 TATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || || || Sbjct 11327457 CATTCAGAAAGAGTCCACACTCCA 11327434 Score = 116 bits (128), Expect = 5e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| |||| ||| | |||||||| || || || | ||||| || || Sbjct 11519604 AATGCAAATATTTGTTAAGACACTCACTGGAAAGACCATCACCCTTGAAGTTGAGAGCTC 11519663 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| || || || ||||| ||||| || ||||| || || || || || Sbjct 11519664 TGATACGATTGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGATCA 11519723 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||| ||||||| ||| || |||||||| || ||| ||| ||||| | |||||||| Sbjct 11519724 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCCGATTATAA 11519783 Query 156002 TATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || || || Sbjct 11519784 CATTCAGAAAGAGTCCACACTCCA 11519807 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || | ||||||||||| || || | ||||| || |||| Sbjct 11335206 ATGCAGATCTTTGTTAAGACCCTTACTGGAAAAACCATAACTCTTGAAGTTGAGAGTTCT 11335147 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || ||||| ||||| || || || || || || || || Sbjct 11335146 GATACCATTGACAATGTTAAGGCAAAAATCCAAGACAAGGAGGGTATCCCCCCTGACCAG 11335087 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| ||||||| ||| || ||||||||||| ||| || ||||| | |||||||| Sbjct 11335086 CAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAGGATGGTAGGACTTTGGCCGATTATAAC 11335027 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || || || Sbjct 11335026 ATTCAAAAAGAGTCCACCCTACA 11335004 Score = 104 bits (114), Expect = 3e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| | |||||| | |||||||| || || ||| | ||||| || ||| Sbjct 11334979 AATGCAAATATTTGTCAAAACACTAACTGGAAAGACCATCACACTTGAAGTTGAGAGTTC 11334920 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| |||||||| || || || || || || || || |||||||| || Sbjct 11334919 AGATACAATTGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCA 11334860 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | || | ||| ||||||||||| || ||| | | || || | |||||||| Sbjct 11334859 GCAGAGGCTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGGACATTGGCTGATTATAA 11334800 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| | || ||||| || || Sbjct 11334799 CATCCAGAAGGAGTCCACCCTTCACTTGGT 11334770 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | |||||||||||||| || | ||||| || || Sbjct 11334750 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAAGTTGAGAGCTCA 11334691 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||||| || || || || || || || ||||| || Sbjct 11334690 GACACCATTGATAATGTCAAAGCGAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 11334631 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| |||||||||||||| ||| | | || || | |||||||| Sbjct 11334630 CAGAGGCTTATATTTGCTGGTAAGCAGCTCGAGGATGGCCGGACATTGGCTGATTATAAC 11334571 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || |||||| | || ||||| || || | | ||||||||||| Sbjct 11334570 ATCCAGAAAGAGTCCACCCTTCACTTGGTTCTCCGTTTAAGAGGCGG 11334524 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || | ||||||||||| || || | || || || |||| Sbjct 11481167 ATGCAGATCTTTGTTAAGACCCTTACTGGAAAAACAATAACTCTCGAGGTTGAGAGTTCT 11481226 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || ||||| ||||| || || || || || || || || Sbjct 11481227 GATACCATTGACAATGTTAAGGCGAAAATCCAAGACAAGGAGGGTATCCCCCCTGACCAG 11481286 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| ||||||| ||| || |||||||| || ||| ||| ||||| | |||||||| Sbjct 11481287 CAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCCGATTATAAC 11481346 Query 156003 AT 156004 || Sbjct 11481347 AT 11481348 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| ||| | ||||||||||| || || | ||||| || ||| Sbjct 11519832 AATGCAAATCTTTGTTAAGACACTCACTGGAAAAACCATCACCCTTGAAGTAGAGAGTTC 11519891 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| || || || ||||| ||||| || || || || || ||||| || Sbjct 11519892 TGACACGATTGACAATGTAAAGGCAAAAATCCAAGACAAGGAGGGAATCCCCCCAGACCA 11519951 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | || | ||| ||||| ||||| || ||| | || || ||||||| || Sbjct 11519952 GCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGGACCTTGGCAGATTACAA 11520011 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || |||||||| || Sbjct 11520012 CATTCAGAAAGAGTCCACCCTTCATTTGGT 11520041 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | |||||||||||||| ||| | ||||| || ||| Sbjct 11481851 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACTATCACACTTGAAGTTGAGAGTTCA 11481910 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| ||| ||||| || || || || || || || ||||| || Sbjct 11481911 GACACCATTGATAACGTTAAAGCAAAAATCCAGGACAAGGAGGGTATCCCCCCAGACCAG 11481970 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || | || | ||| |||||||||||||||||| Sbjct 11481971 CAGAGGCTCATATTTGCTGGTAAGCAGCTCGAAGAT 11482006 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| ||| | ||||||||||| || || | ||||| || ||| Sbjct 11327409 AATGCAAATCTTTGTTAAGACACTCACTGGAAAAACCATCACCCTTGAAGTAGAGAGTTC 11327350 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| || || || ||||| ||||| || || || || || ||||| || Sbjct 11327349 TGACACAATTGACAATGTAAAGGCGAAAATCCAAGACAAGGAGGGAATCCCCCCAGACCA 11327290 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | || | ||| ||||| ||||| || ||| | || || ||||||| || Sbjct 11327289 GCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGGACCTTGGCAGATTACAA 11327230 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 || |||||| | || |||||| Sbjct 11327229 CATTCAGAAAGAGTCCACCCTTCAT 11327205 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || | ||||| |||||||| || | ||||| || ||| Sbjct 11334294 ATGCAAATATTTGTGAAGACCCTTACTGGTAAAACTATCACCCTTGAAGTTGAGAGTTCA 11334235 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || |||||| ||||| || || || ||||| || || || || || Sbjct 11334234 GACACTATCGACAATGTGAAAGCAAAAATCCAGGACAAGGAAGGTATTCCACCCGACCAG 11334175 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| |||||| ||||||| | || || ||| Sbjct 11334174 CAGAGGCTAATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGAACTTTGGCTGACTACAAT 11334115 Query 156003 ATA 156005 ||| Sbjct 11334114 ATA 11334112 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | ||||| |||||||| || | ||||| || ||| Sbjct 11482079 ATGCAAATTTTTGTGAAGACCCTTACTGGTAAAACTATCACCCTTGAAGTAGAGAGTTCA 11482138 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || |||||| ||||| || || || ||||| || || || || || Sbjct 11482139 GACACTATTGATAATGTGAAAGCAAAAATTCAGGACAAGGAAGGTATTCCACCTGACCAG 11482198 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| |||||| ||||||| | || || || Sbjct 11482199 CAGAGGCTAATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGAACTTTGGCTGACTACAAC 11482258 Query 156003 ATA 156005 ||| Sbjct 11482259 ATA 11482261 Score = 86.0 bits (94), Expect = 9e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| | ||||| | ||| |||| || || ||| | ||||| || ||| Sbjct 11481394 AATGCAAATATTTGTCAAAACGCTTACTAGAAAGACAATCACACTTGAAGTTGAGAGTTC 11481453 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| | | || ||||| || || || || || || || || |||||||| || Sbjct 11481454 AGATACAACTGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCA 11481513 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | || | ||| ||||||||||| || ||| | | || || | |||| || Sbjct 11481514 GCAGAGGCTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGGACATTGGCTCATTACAA 11481573 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||| || ||| | || |||||||| || Sbjct 11481574 TATCCAGAAGGAGTCCACCCTTCATTTGGT 11481603 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | ||||| || || ||||| | ||||| || ||| Sbjct 11481623 ATGCAAATTTTTGTGAAGACCCTTACTGGTAAGACCATTACCCTTGAAGTTGAGAGTTCA 11481682 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| ||||| || || || || ||||| || ||||| || Sbjct 11481683 GACACCATCGATAATGTTAAAGCGAAAATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 11481742 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| ||| ||||||||||| || ||| | | || || | |||||||| Sbjct 11481743 CAGAGGCTCATTTTTGCAGGTAAGCAGCTTGAGGATGGCCGGACATTGGCTGATTATAAC 11481802 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || |||||| | || ||||| || || | | || ||||| || Sbjct 11481803 ATCCAGAAAGAGTCCACACTTCACTTGGTTCTCCGTTTGAGAGGTGG 11481849 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | ||||||||||||||||| | ||||| || ||| Sbjct 11334522 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACTATTACCCTTGAAGTTGAGAGTTCA 11334463 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || |||||| |||||| || || || || || || || ||||| || Sbjct 11334462 GACACCATCGATAATGTGAAAGCTAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 11334403 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || | || | ||| ||||| ||||| |||||| Sbjct 11334402 CAGAGGCTCATATTTGCTGGTAAACAGCTGGAAGAT 11334367 >seq57 Length=24021853 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| | || ||||| || ||||| || ||||||||| || Sbjct 5916106 ATGCAGATATTTGTGAAAACTCTTACAGGAAAGACCATTACTTTGGAAGTCGAAAGCTCA 5916165 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| ||| || || || || || || || || || || || || Sbjct 5916166 GACACGATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCACCGGACCAG 5916225 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | |||||| ||||||||||||||| |||| | | ||||| ||| Sbjct 5916226 CAGAGGCTGATCTTTGCCGGCAAGCAGCTCGAAGATGGGCGAACCCTTGCCGATTACAAT 5916285 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || ||||| || || Sbjct 5916286 ATCCAGAAAGAGTCAACTCTTCACTTGGT 5916314 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || | || ||||| || ||||| || ||||||||| || Sbjct 5891133 ATGCAGATATTTGTGAAGACTCTTACAGGAAAGACCATTACTTTGGAAGTCGAAAGCTCC 5891192 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| || || || || || || || || || || || || Sbjct 5891193 GACACCATCGACAATGTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCACCGGACCAG 5891252 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | |||||| ||||||||||||||| |||| | | ||||| ||| Sbjct 5891253 CAGAGGCTGATCTTTGCCGGCAAGCAGCTCGAAGATGGGCGAACCCTTGCCGATTACAAT 5891312 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || ||||| || || Sbjct 5891313 ATCCAGAAAGAGTCAACTCTTCACTTGGT 5891341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731854554001200