Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq51 131 5e-25 seq35 127 6e-24 seq11 111 5e-19 seq12 107 6e-18 seq23 93.3 1e-13 >seq51 Length=29360087 Score = 131 bits (144), Expect = 5e-25 Identities = 283/417 (68%), Gaps = 10/417 (2%) Strand=Plus/Plus Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 ||||||||||| ||| || | ||||| | ||||| || || |||||||| |||| Sbjct 1216651 AATCCATCCATCTCTGTCAACAGCTGATTGATGGTTTGCTCTCTCTCATCATTCCCACCT 1216710 Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059 | | ||| | | ||| | | || || ||||||||||| |||||||| | Sbjct 1216711 CC---AAGACCTGCCCCTCTC---TGCCTCCCCACTGCATCAATTTCATCAATGAACACA 1216764 Query 289060 ACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGA 289119 | || || | ||| | | || | |||| || || | || | ||||||||| | Sbjct 1216765 ATGCAGGGTGCCTTTGATTTTGCCTTCTCAAACAAGTCCCGGACTCTGGATGCTCCCACT 1216824 Query 289120 CCAACATACATTTCTACAAATTCAGAAGC-GGATACTTGAATGAATGTTACATTTGCTTC 289178 || ||| ||| ||| || |||||||| || | || ||| ||||| ||| |||||| Sbjct 1216825 CCTACAAACAATTCAACGAATTCAGAGGCTGCGCACGAGAA-GAATGGCACACCTGCTTC 1216883 Query 289179 GCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAAC 289238 || || ||||| || ||||| || ||||| || ||||| |||||||| | || ||| Sbjct 1216884 TCCGGCCACTGCTCTGGCCAGTAGGGTCTTGCCGGTTCCGGGTGGTCCAACCAAAAGACA 1216943 Query 289239 TCCCTTTGGTACTTTTGC-CCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTA 289297 ||||| || | ||| || ||||| | | || || |||||| | || || || || | Sbjct 1216944 ACCCTTGGGAATTTTGGCTCCCAG-GGCGGTGTACTTATCAGGGTTTTTCAAGAAATCGA 1217002 Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354 ||| |||| || || |||||||| ||| ||| || ||||| || || |||| Sbjct 1217003 CAACCTCCTGCAGCTCCAGTTTTGCCTGATCGGCTCCGGCGACATCTGCGAATGTAA 1217059 >seq35 Length=22702307 Score = 127 bits (140), Expect = 6e-24 Identities = 330/490 (67%), Gaps = 26/490 (5%) Strand=Plus/Minus Query 288873 TAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAG-ATTCGG 288931 ||| || | ||| | || || || ||||| || ||||| | |||| ||| | | | Sbjct 2305976 TAAGGCAGAGTCAAGAATGTCTGCCCTGTTAGTGGCTGCAATAACAATTATACCAGT--G 2305919 Query 288932 TTTGCTT-AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCA 288990 ||| ||| ||| |||||||| || |||| || |||||||||||||||||||||||| Sbjct 2305918 TTTCCTTCAAAACCATCCATTTCAGTCAAAAGCTGGTTAAGTGTTTGTTCCCTTTCATCA 2305859 Query 288991 TTTGAACCTCTTGAATCACCCGAATC--GCTCCtttttttA--CCAACAGCATCAATTTC 289046 ||| |||| | || | || | |||| ||| ||||||||||||||||| Sbjct 2305858 TTT---CCTCCT-------CCAATTCCAGTTCCTCTTTGGCGCCCAACAGCATCAATTTC 2305809 Query 289047 GTCAATGAAAATCACACACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACA 289104 |||| || | | || |||| ||| | | || ||| ||| | || | || Sbjct 2305808 ATCAACAAATACAATGCAGGGAGCATTCTCCTTGGCCTTCTTGAAAAGA--TCACGCACT 2305751 Query 289105 CGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAA 289163 | ||||| |||| ||||||| |||| || ||||| |||||| | || | | || | || Sbjct 2305750 CTAGATGCACCAACACCAACAAACATCTCAACAAACTCAGAACCTGAGA-TAGAGAAAAA 2305692 Query 289164 TGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGG 289223 || ||| |||||| || || | |||| |||| || || ||||| || ||||| || || Sbjct 2305691 TGGAACACCTGCTTCACCAGCAATTGCCTTCGCTAGCAGAGTCTTCCCAGTTCCTGGCGG 2305632 Query 289224 TCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCT 289283 || | | ||||| || || || | || ||| | | | || |||| ||||| Sbjct 2305631 GCCAACAAGAAGAACACCTTTAGGGATGCGAGCTCCAACTGCAGTGAATCTCTC-GGGCT 2305573 Query 289284 CTTT-AAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACAT 289342 ||| | ||| || || | |||| | || | |||||| ||||| || || |||| Sbjct 2305572 TTTTCAGAAACTCCACTACTTCCATGAAATCTTGTTTTGCTTCATCTACCCCAGCAACAT 2305513 Query 289343 CAGCAAAAGT 289352 || ||||||| Sbjct 2305512 CATCAAAAGT 2305503 Score = 95.1 bits (104), Expect = 4e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| ||||| || || ||||||||| | |||| | | || | ||| |||| | | Sbjct 4650385 ACAGACATGAACCCTATAAGCATCACTTTGGTCAAACAACCTTTCTTTGAGGAAGTGGGC 4650326 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||| || || | |||||| || ||||| |||||||| || ||||| ||||||||||| || Sbjct 4650325 TGCTCCATGAGCAATCATGCAGTCACGTTCCATTTCTCCAAAACGGAGACCACCATCACG 4650266 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAG 251573 || | ||||| |||||||| | ||| || Sbjct 4650265 AGATCGCCCCTCAGCAGGCTGTCTAGTAAG 4650236 >seq11 Length=21508407 Score = 111 bits (122), Expect = 5e-19 Identities = 263/385 (68%), Gaps = 13/385 (3%) Strand=Plus/Plus Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtt 289023 |||||||| || ||| | |||||||| |||||| ||| | || || ||| || Sbjct 5960268 TGATTAAGAGTACTTTCACGCTCATCATTGGAACCTGA-GAAGCCTCCACGTC-CTC-TT 5960324 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 | ||||| |||||||| || ||||| || || | || || | | || || || Sbjct 5960325 GCTCGACCAATTGCATCAATCTCATCAATAAATATTATACTAGGTGCACACTGCCTTGC- 5960383 Query 289084 ATTGC--AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATT 289141 || | ||| || | ||| || | ||||| ||||| ||||||| |||| || | ||| | Sbjct 5960384 -TTCCTGAAACAAGTTTCTCACCCTGGATGGTCCAACACCAACAAACATCTCCATAAAAT 5960442 Query 289142 CAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 | ||| | |||| | || | ||| | || | ||| ||||| ||| | || ||| Sbjct 5960443 CTGAACCAGATA-TGGATAAGAAAGGCACGGCAGATTCTCCTGCAGTTGCTTTTGCTAGA 5960501 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCC 289259 || ||||| ||||| || || || ||| | || ||| | || ||||| | |||||| ||| Sbjct 5960502 AGGGTCTTCCCTGTGCCTGGAGGGCCCACCAAAAGAGCACCTTTTGGAATTTTTGCTCCC 5960561 Query 289260 AGCAGACTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATT 289318 | | ||| |||||| | ||| |||| | || | |||| |||| | ||| | | Sbjct 5960562 AACT--CTTCATATTTTTTAGGATTCTTGAGGAAGTGAACAAATTCCATGATTTCTTGCT 5960619 Query 289319 TTGCCTCATCACATCCTGCTACATC 289343 |||| ||||||||||| || ||||| Sbjct 5960620 TTGCTTCATCACATCCAGCAACATC 5960644 >seq12 Length=21026613 Score = 107 bits (118), Expect = 6e-18 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||||| || ||||| ||||| || ||||| | |||||| || | || Sbjct 18117761 TACCCTTCCTCTTGCCTCCTCCTTGATCAACATAACGGGCAGTGTCATTGAACACCCGTA 18117820 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 ||||||||| ||| |||||||| || ||||| ||||| ||||||| || | | | Sbjct 18117821 GCATAGGAACAATGCCATTGGATGTCCCATTTGTTCCACGAATATAACTTCCTGTGGCAC 18117880 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| ||||||| | | ||||| || || | | || || ||| || |||| Sbjct 18117881 GAATGTTATGAACAGAAACACCAATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCT 18117940 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||| ||| | | || ||||||||| |||||||| ||| Sbjct 18117941 TTAGAGTGTCATATATTCCTTCAATACTATCATCTTTCAT 18117980 >seq23 Length=22385789 Score = 93.3 bits (102), Expect = 1e-13 Identities = 217/322 (67%), Gaps = 4/322 (1%) Strand=Plus/Plus Query 289018 CTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGT 289077 |||||| | ||||| ||||| || || ||||| ||||| | | || | | ||| Sbjct 14818855 CTCCTTGCTCAACCAATTGCATCTATCTCATCAATAAAAATTATGCTAGGTGCACAATGT 14818914 Query 289078 CTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACA 289137 || || | ||| || | | | || | ||||| ||||| ||| || ||||||| | | Sbjct 14818915 CTTGCCTCTTGAAACAAATTTATGACCCTGGATGGTCCAACTCCAGCAAACATTTCCATA 14818974 Query 289138 AATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGC 289196 || || || | |||| | || | ||| |||| | || |||||| ||| | || Sbjct 14818975 AAATCTGATCCAGATA-TAGATAGGAAAAGCACATCAGATTTGCCTGCAGTTGCTTTTGC 14819033 Query 289197 CAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC 289256 ||||||||||| ||||| ||||| || || | | ||| | || ||||| | |||||| Sbjct 14819034 AAGAAGTGTCTTCCCTGTGCCAGGAGGGCCTACAAGAAGAGCACCTTTTGGAATTTTTGC 14819093 Query 289257 -CCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCAT 289315 |||| | || |||||||| || |||| | || | |||| ||| | ||| | Sbjct 14819094 TCCCAAC-TCCTCATATTTCTTTGGCTTCTTGAGGAAGTGCACAAACTCCATGATTTCTT 14819152 Query 289316 ATTTTGCCTCATCACATCCTGC 289337 |||||||||||||| || || Sbjct 14819153 GCTTTGCCTCATCACAGCCAGC 14819174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471781638436659