Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq42 165 1e-34 seq11 87.8 2e-11 >seq42 Length=30274277 Score = 165 bits (182), Expect = 1e-34 Identities = 202/273 (74%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||| || ||||| ||||| || || || ||||| | |||| || || ||| Sbjct 25647244 GAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGGCGACCTGG 25647303 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||||| ||||| ||||| ||| ||||| ||||| |||||||| Sbjct 25647304 ACCTCCTTCATGAACCTTCCGGCGAGGTTTTCGAGGACGATTCCGTCAGAAGCGGCGAAG 25647363 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||| || |||| ||||| ||||||| | |||| |||| | |||| Sbjct 25647364 AAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTGAGGTTTTCCCA-TTGACG 25647422 Query 869813 GT-GTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | ||| |||||| || |||||||| ||||| | ||| ||||||||||| ||||| Sbjct 25647423 CTGGTCCTGAGAGAGGTCGACTTCCTCGGCTGTCCAAAACGACGCCTCGGCCTTCTTGTA 25647482 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 ||| ||||| |||| |||| | || ||||| Sbjct 25647483 CATTTCCCAGACTTCAGGGTACTGAATCGGGAA 25647515 Score = 95.1 bits (104), Expect = 1e-13 Identities = 165/239 (69%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 ||||| || || | | |||||| ||||||||||| |||| | ||||| | ||||||| Sbjct 25646659 TACTCCCCAACCCTCTTCTCGAAGAAGTTGGTCTTTCCCTGTAAAGAGATTAGCTCCATC 25646718 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 || |||||| || | ||||| ||| || | || | | |||||||||| Sbjct 25646719 CAGTCGAACGGATTCGAAACGTTGTACATCTTCCCGTAACCCAAGGCGCCGAGCAGGCGA 25646778 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 ||||| || || |||||||| |||| ||| || | |||||| || | || || | Sbjct 25646779 TCGGCAACGAATTCGATGTATTGGCTCATTAGAGCACTGTTCATCCCCACTAGAGCGCAC 25646838 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCT 868938 |||| || |||| || |||||| | || || || || | ||| ||| ||| ||||| Sbjct 25646839 GGCAACGCGTCGCAGACGAACTCTCTTTCTATATCCACCGAGTCGGCGACGAT-TGCCT 25646896 Score = 93.3 bits (102), Expect = 5e-13 Identities = 133/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || |||||||| ||||| ||||| ||||| || || | |||||| || || ||||| ||| Sbjct 25647004 CCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAG 25647063 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 ||||| || ||| ||| || ||| || || ||||||||||| ||| ||| | Sbjct 25647064 ATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCC------G 25647117 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | |||||| | ||||| | ||| || ||| || | || | || ||||| ||| Sbjct 25647118 TCGATCCATCGGAGAGCCCACTGGGCTTTCTTCGCTACACAGGGGATGGTATCGATTGCG 25647177 Query 869399 CGAAAGAG 869406 ||||||| Sbjct 25647178 TGAAAGAG 25647185 >seq11 Length=21508407 Score = 87.8 bits (96), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| |||||| | | | || || || |||||||||||||| || | || Sbjct 5192742 GCTTGGCCAACTCGCCGGGAAGTACCAATCGTACTGCGGTCTGGATCTCCCGAGAAGTGA 5192683 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| |||||| || ||||||| || ||||| | | | |||| | Sbjct 5192682 TCGTCGGCTTCTTGTTGTAGCGCGCCAGCCGCGATGCCTCCTGGGCAAGTTTCTCGAAGA 5192623 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||| | ||| | |||| ||||||| || | ||| || | Sbjct 5192622 TGTCGTTGATGAAGCTGTTCATGATCCCCATGGCCTTGCTGGAGATCCCGATGTCAGGAT 5192563 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||||||| ||||| Sbjct 5192562 GGACCTGCTTCAGCACCTTGAAGATG 5192537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106982702649519