Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq42 104 2e-17 seq57 91.5 1e-13 >seq42 Length=30274277 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||||||||| || || | ||||| || ||||| || | ||| |||| Sbjct 11327181 AATGCAAATATTTGTAAAGACGCTGACCGGGAAGACCATCACTCTTGAAGTGGAGAGCTC 11327122 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| ||| | | || || ||||| ||||| || || | ||| ||||| Sbjct 11327121 TGATACAATCGACAATGTGAAGGCAAAGATCCAAGACAAGGAGGGTATCCCCCCAGATCA 11327062 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || || || | ||| ||||||||||| ||||||| || || |||| |||||||| Sbjct 11327061 GCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTACAA 11327002 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||||||| ||||| || | ||| |||| Sbjct 11327001 CATTCAAAAGGAATCCACCCTTCACCTGGT 11326972 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---C 110328 ||||||||||||||| || || | ||||| || ||||| || | || |||| | Sbjct 11520060 AATGCAAATATTTGTAAAGACGCTGACCGGGAAGACCATCACTCTTGAGGTGGAGAGCTC 11520119 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 |||| || ||| | | || || |||||| ||||| || || | ||| || Sbjct 11520120 TGAC---ACAATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAGGGTATCCCCCCAGA 11520176 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||| || || || || | ||| ||||||||||| ||||||| || || |||| ||||| Sbjct 11520177 TCAGCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTA 11520236 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||| ||||| ||||| || | ||| |||| Sbjct 11520237 CAACATACAAAAGGAATCCACCCTTCACCTGGT 11520269 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||||||||| || || | || || || ||||| ||| | ||| ||| Sbjct 11327637 AATGCAAATATTTGTTAAGACACTCACTGGAAAGACCATCACCCTTGAAGTTGAGAGCTC 11327578 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | | ||||| ||| || ||||| ||||| | ||| ||||| Sbjct 11327577 TGATACGATTGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGATCA 11327518 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||| | |||| ||| || || ||||| ||||||| ||| || |||| ||||| || Sbjct 11327517 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCCGATTATAA 11327458 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||| ||||| || || | ||| |||| Sbjct 11327457 CATTCAGAAAGAGTCCACACTCCACCTGGT 11327428 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||||||||| || || | || || || ||||| ||| | ||| ||| Sbjct 11519604 AATGCAAATATTTGTTAAGACACTCACTGGAAAGACCATCACCCTTGAAGTTGAGAGCTC 11519663 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | | ||||| ||| || ||||| ||||| | ||| ||||| Sbjct 11519664 TGATACGATTGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGATCA 11519723 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||| | |||| ||| || || ||||| ||||||| ||| || |||| ||||| || Sbjct 11519724 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCCGATTATAA 11519783 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||| ||||| || || | ||| |||| Sbjct 11519784 CATTCAGAAAGAGTCCACACTCCACCTGGT 11519813 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||||||||||||||| |||| || || ||||| || | ||| ||| | Sbjct 11334979 AATGCAAATATTTGTCAAAACACTAACTGGAAAGACCATCACACTTGAAGTTGAGAGTTC 11334920 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | | || || ||||| ||||| || || | || || || Sbjct 11334919 AGATACAATTGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCA 11334860 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || ||||| | ||| ||||| ||||||||||||| | | ||| |||| ||||| || Sbjct 11334859 GCAGAGGCTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGGACATTGGCTGATTATAA 11334800 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||| || || || || || | ||| |||| | | ||| |||| || Sbjct 11334799 CATCCAGAAGGAGTCCACCCTTCACTTGGTTCTCCGTCTGAGAGGTGG 11334752 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| || || | || || |||||||| ||| | ||| ||| | Sbjct 11327409 AATGCAAATCTTTGTTAAGACACTCACTGGAAAAACCATCACCCTTGAAGTAGAGAGTTC 11327350 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | ||||| ||| || ||||| || || | ||| || || Sbjct 11327349 TGACACAATTGACAATGTAAAGGCGAAAATCCAAGACAAGGAGGGAATCCCCCCAGACCA 11327290 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || || || | ||| ||||||||||| ||||||| | || |||| |||||||| Sbjct 11327289 GCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGGACCTTGGCAGATTACAA 11327230 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||| ||||| || || | || |||| | | ||| |||| |||| Sbjct 11327229 CATTCAGAAAGAGTCCACCCTTCATCTGGTTCTCCGGCTGAGAGGTGGAA 11327180 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| |||||||| || || ||||| || ||||| || || | ||| ||| || | Sbjct 11482307 ATGCAGATATTTGTGAAGACCTTAACTGGTAAAACAATCACTCTTGAAGTTGAGAGCTCA 11482366 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | || || || ||| ||||| |||||| | || || || Sbjct 11482367 -GACACAATTGACAATGTCAAGGCAAAAATTCAGGACAAGGAAGGCATTCCTCCTGACCA 11482425 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| || || || | ||| || |||||||| ||||||| | | || |||| || ||||| Sbjct 11482426 ACAGAGGCTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGCACTTTGGCTGACTACAA 11482485 Query 110452 CATTCAAAAAGAATCTACGTTGCAC 110476 || || |||||||||||| | ||| Sbjct 11482486 TATACAGAAAGAATCTACGCTTCAC 11482510 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| || || | || || |||||||| ||| | ||| ||| | Sbjct 11519832 AATGCAAATCTTTGTTAAGACACTCACTGGAAAAACCATCACCCTTGAAGTAGAGAGTTC 11519891 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | ||||| || || ||||| || || | ||| || || Sbjct 11519892 TGACACGATTGACAATGTAAAGGCAAAAATCCAAGACAAGGAGGGAATCCCCCCAGACCA 11519951 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || || || | ||| ||||||||||| ||||||| | || |||| |||||||| Sbjct 11519952 GCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGGACCTTGGCAGATTACAA 11520011 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||| ||||| || || | || |||| | | ||| |||| |||| Sbjct 11520012 CATTCAGAAAGAGTCCACCCTTCATTTGGTTCTCCGGCTGAGAGGTGGAA 11520061 >seq57 Length=24021853 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTG 110330 |||||| || ||||| |||||| ||||||| || || ||||| | || || | || Sbjct 5891588 AATGCAGATTTTTGTTAAAACTCTAACCGGAAAGACAATTACTCTAGAGGTCGAAAGCTC 5891647 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 ||| || | | | | || ||| ||||| || || || ||| | || ||| | Sbjct 5891648 -CGACACCATTGACAACGTGAAAGCTAAGATCCAGGATAAGGAGGGCATTCCACCGGACC 5891706 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || || || |||| ||||| || |||||||| || | | |||| | |||||||||| Sbjct 5891707 AGCAGAGGCTGATTTTCGCGGGGAAGCAGCTGGAAGACGGCCGAACTCTCGCGGATTACA 5891766 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||| ||||| || || | ||| ||||| | | ||||| || || Sbjct 5891767 ACATTCAGAAAGAGTCAACCCTCCACTTGGTGCTTCGTCTGCGTGGTGG 5891815 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 ||||| || ||||| ||||| | ||||| || ||||| ||| | || || | || Sbjct 5916790 ATGCAGATTTTTGTGAAAACCCTCACCGGAAAGACCATCACCCTGGAGGTCGAAAGCTC- 5916848 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || | | | | || ||| ||||||| ||||| ||||| | || || || Sbjct 5916849 CGACACCATTGACAACGTGAAAGCGAAGATTCAGGACAAGGAAGGGATTCCACCAGACCA 5916908 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || ||||| |||| || || || ||||| ||||||| |||| | || |||||||| Sbjct 5916909 GCAGAGACTGATTTTCGCCGGCAAGCAGCTTGAGGATGGGCGAACTCTTGCTGATTACAA 5916968 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||| || || ||||| | ||| ||||| | | ||||| || || Sbjct 5916969 CATTCAGAAGGAGTCTACCCTCCACTTGGTGCTTCGTCTGCGCGGTGG 5917016 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| ||||| | ||||| || ||||| ||| | || ||| | Sbjct 5916562 ATGCAGATTTTTGTAAAAACCCTCACCGGAAAGACCATCACCCTGGAGGTCGAGAGCTCC 5916621 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || ||| |||||| || || || ||| | || || || Sbjct 5916622 GACACCATTGACAACGTGAAAGCGAAGATCCAGGATAAGGAGGGCATTCCACCAGACCAG 5916681 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || |||| || || || |||||||| || | | |||| | || ||||||||| Sbjct 5916682 CAGAGGCTGATTTTCGCCGGAAAGCAGCTGGAAGACGGCCGAACCCTCGCCGATTACAAC 5916741 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||||||||| || || ||||| ||||| Sbjct 5916742 ATTCAAAAAGAGTCAACTCTGCACTTGGTG 5916771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412832004916151