Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq42 131 3e-24 seq11 120 5e-21 >seq42 Length=30274277 Score = 131 bits (144), Expect = 3e-24 Identities = 180/250 (72%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || ||||||||||||||||| | ||||| ||||| || ||||| ||| Sbjct 25647289 GCCTCGGCGACCTGGACCTCCTTCATGAACCTTCCGGCGAGGTTTTCGAGGACGATTCCG 25647348 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || |||||||| ||||| |||| || |||| ||||| ||||||| | |||| Sbjct 25647349 TCAGAAGCGGCGAAGAAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTGAGG 25647408 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 |||| || | ||| ||||||||| |||||||| |||||||| || ||| Sbjct 25647409 TTTTCCCATTGACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCTGTCCAAAACGACGCC 25647468 Query 796330 TCGGCCTTTTTGTACATCTCCCATA--TCCGTTGGTAGCGGATGGGGAACAGAACAAAGC 796387 |||||||| |||||||| ||||| | || | |||| | || ||||||| | || | Sbjct 25647469 TCGGCCTTCTTGTACATTTCCCAGACTTCAG--GGTACTGAATCGGGAACATACAGAACC 25647526 Query 796388 GATTGGGGTT 796397 ||| ||||| Sbjct 25647527 GATCTGGGTT 25647536 Score = 118 bits (130), Expect = 2e-20 Identities = 197/285 (69%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || |||||||| ||||| ||||| ||||| || || | ||||| || || ||||| ||| Sbjct 25647004 CCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAG 25647063 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 ||||| || ||| ||| || ||| || || |||||||| || || ||| || Sbjct 25647064 ATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGTC---- 25647119 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| | ||||||| || || ||| || |||| | || ||||| ||| Sbjct 25647120 --GATCCATCGGAGAGCCCACTGGGCTTTCTTCGCTACACAGGGGATGGTATCGATTGCG 25647177 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 ||||||| || ||||| || ||||||| || | || | | || ||| Sbjct 25647178 TGAAAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGTAC 25647237 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 |||| |||||||||||||| ||||| ||||| || ||||| ||| Sbjct 25647238 ATCTCGGAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAG 25647282 Score = 102 bits (112), Expect = 1e-15 Identities = 179/253 (71%), Gaps = 11/253 (4%) Strand=Plus/Plus Query 793899 GCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 793958 ||||| |||||| || || | | |||||| ||||||||||| |||| | ||||| Sbjct 25646650 GCCTTCTGATACTCCCCAACCCTCTTCTCGAAGAAGTTGGTCTTTCCCTGTAAAGAGATT 25646709 Query 793959 AACTCCATCCACGGGAACGGGTTGG--CCGTCAGGTAGTGCTTCTCGCACCCGA--GCGA 794014 | ||||||||| |||||| || | ||| ||| |||| || | || | ||| Sbjct 25646710 AGCTCCATCCAGTCGAACGGATTCGAAACGT--TGTACATCTTCCCGTAACCCAAGGCGC 25646767 Query 794015 CGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCC 794074 || |||||||| ||||| |||||||| ||||| |||| ||| || || |||||| || Sbjct 25646768 CG--AGCAGGCGATCGGCAACGAATTCGATGTATTGGCTCATTAGAGCACTGTTCATCCC 25646825 Query 794075 GATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGA 794133 | || || ||| |||| || |||| ||| |||||| | || || || || | ||| Sbjct 25646826 CACTAGAGCGCAC-GGCAACGCGTCGCAGACGAACTCTCTTTCTATATCCACCGAGTCGG 25646884 Query 794134 TGATGATCTGCCT 794146 || ||| ||||| Sbjct 25646885 CGACGAT-TGCCT 25646896 >seq11 Length=21508407 Score = 120 bits (132), Expect = 5e-21 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||| || ||||||||||| ||||| || || |||||| |||||| |||||| | | Sbjct 5192781 TGAACTTCGTTACGGCCTTGGTTCCCTCCGAAACAGCGTGCTTGGCCAACTCGCCGGGAA 5192722 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || |||||||||||||| || | |||||| |||||| || Sbjct 5192721 GTACCAATCGTACTGCGGTCTGGATCTCCCGAGAAGTGATCGTCGGCTTCTTGTTGTAGC 5192662 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||| || ||||| | | | |||| |||||||||| || ||||| Sbjct 5192661 GCGCCAGCCGCGATGCCTCCTGGGCAAGTTTCTCGAAGATGTCGTTGATGAAGCTGTTCA 5192602 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | ||| ||||||| || | ||| || || |||||||| ||||||||| Sbjct 5192601 TGATCCCCATGGCCTTGCTGGAGATCCCGATGTCAGGATGGACCTGCTTCAGCACCTTG 5192543 Score = 111 bits (122), Expect = 2e-18 Identities = 170/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||| || ||||||||||| |||||||| ||||||||| |||||| |||||| | | Sbjct 5188046 TGAACTTCGTTACGGCCTTGGTGCCCTCTGAAACGGCGTGCTTGGCCAACTCGCCGGGAA 5187987 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || ||||| ||||||||||| || | |||||| |||||| | Sbjct 5187986 GCACCAATCGGACGGCCGTCTGGATCTCCCGAGAAGTGATCGTCGGCTTCTTGTTGTAAC 5187927 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGC-GGTCGATCATGTCGTTGACAAACGAGTTC 1485648 ||||||| || ||||| || | || |||| |||||||||| || |||| Sbjct 5187926 GCGCCAGCCGCGATGCCTC-CTGAGCAAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTC 5187868 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||||| ||| | ||| ||||||| || | ||| || || ||||| || | |||||| Sbjct 5187867 ATGATCCCCATGGCCTTGCTGGAGATCCCGATGTCAGGATGGACCTGTTTCAAGACCTTG 5187808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916043543712173