Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq57 100 2e-16 seq42 96.9 3e-15 >seq57 Length=24021853 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTG 107613 |||||| |||||||| |||||| |||| || || || ||||| | || || | ||| Sbjct 5891588 AATGCAGATTTTTGTTAAAACTCTAACCGGAAAGACAATTACTCTAGAGGTCGAAAGCTC 5891647 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||| || | | | | || ||| ||||| ||||| || ||| | || ||| | Sbjct 5891648 -CGACACCATTGACAACGTGAAAGCTAAGATCCAGGATAAGGAGGGCATTCCACCGGACC 5891706 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || |||| ||||| || |||||||| |||| | ||| | ||||| |||| Sbjct 5891707 AGCAGAGGCTGATTTTCGCGGGGAAGCAGCTGGAAGACGGCCGAACTCTCGCGGATTACA 5891766 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||| || ||||| || | ||| ||||| Sbjct 5891767 ACATTCAGAAAGAGTCAACCCTCCACTTGGTG 5891798 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| ||||| | || || || ||||| ||| | || ||| ||| Sbjct 5890905 ATGCAGATCTTTGTTAAAACACTTACCGGAAAGACCATAACCCTAGAGGTTGAGAGCTC- 5890963 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || ||||| || ||||| ||| | || |||||| Sbjct 5890964 CGACACGATCGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCGGATCA 5891023 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || |||||||| || |||| |||| |||| |||||||| Sbjct 5891024 GCAGAGGCTGATATTCGCCGGGAAACAGCTTGAAGACGGTCGAACACTGGCCGACTACAA 5891083 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || |||||| | ||| Sbjct 5891084 CATCCAGAAGGAGTCCACCTTGCACTTAGTG 5891114 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| ||||| | || || || ||||| ||| | || ||| ||| Sbjct 5916562 ATGCAGATTTTTGTAAAAACCCTCACCGGAAAGACCATCACCCTGGAGGTCGAGAGCTC- 5916620 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || ||| ||||| ||||| || ||| | || || || Sbjct 5916621 CGACACCATTGACAACGTGAAAGCGAAGATCCAGGATAAGGAGGGCATTCCACCAGACCA 5916680 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || |||| || || || |||||||| |||| | ||| | || || ||||| Sbjct 5916681 GCAGAGGCTGATTTTCGCCGGAAAGCAGCTGGAAGACGGCCGAACCCTCGCCGATTACAA 5916740 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||||| ||||| || ||||| ||||| Sbjct 5916741 CATTCAAAAAGAGTCAACTCTGCACTTGGTG 5916771 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||||||| | || || || || || ||| | || ||| ||| | Sbjct 5915878 ATGCAGATCTTTGTCAAAACTCTTACCGGAAAGACGATAACCCTAGAGGTTGAGAGCTCG 5915937 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || || ||||| || ||||| ||| | || |||||| Sbjct 5915938 -GACACGATCGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCGGATCA 5915996 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || || ||||| || |||| ||| |||| |||||||| Sbjct 5915997 GCAGAGGCTAATATTCGCCGGGAAGCAGCTTGAAGACGGTCGAACTCTGGCCGACTACAA 5916056 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || |||||| | ||| Sbjct 5916057 CATCCAGAAGGAGTCCACCTTGCACTTAGTG 5916087 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614 ||||| |||||||| ||||| | || || || ||||| ||| | || || | ||| Sbjct 5916334 ATGCAGATTTTTGTGAAAACCCTTACCGGGAAGACCATCACCCTGGAGGTCGAAAGCTC- 5916392 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || || ||||| ||||| || ||| | || || || Sbjct 5916393 CGACACCATTGACAACGTGAAGGCTAAGATCCAGGATAAGGAGGGCATTCCACCAGACCA 5916452 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || ||||| |||||||| || | | ||| | || |||||||| Sbjct 5916453 GCAGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGAACCCTCGCCGACTACAA 5916512 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||||| ||||| || ||||| ||||| Sbjct 5916513 CATTCAAAAAGAGTCAACTCTGCACTTGGTG 5916543 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614 ||||| |||||||| ||||| | || || || ||||| ||| | || || | ||| Sbjct 5916790 ATGCAGATTTTTGTGAAAACCCTCACCGGAAAGACCATCACCCTGGAGGTCGAAAGCTC- 5916848 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || ||| |||||| || || ||||| | || || || Sbjct 5916849 CGACACCATTGACAACGTGAAAGCGAAGATTCAGGACAAGGAAGGGATTCCACCAGACCA 5916908 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||||| |||| || || || ||||| ||||| | ||| | || || ||||| Sbjct 5916909 GCAGAGACTGATTTTCGCCGGCAAGCAGCTTGAGGATGGGCGAACTCTTGCTGATTACAA 5916968 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| ||||||||||| | ||| ||||| Sbjct 5916969 CATTCAGAAGGAGTCTACCCTCCACTTGGTG 5916999 >seq42 Length=30274277 Score = 96.9 bits (106), Expect = 3e-15 Identities = 169/246 (69%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| || || | || || ||||| |||||| | ||| ||| | Sbjct 11334522 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACTATTACCCTTGAAGTTGAGAGTTCA 11334463 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || ||| || || || || || || | ||| || ||| Sbjct 11334462 GACACCATCGATAATGTGAAAGCTAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 11334403 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| |||||||||||||| || | ||| |||||||||||||| Sbjct 11334402 CAGAGGCTCATATTTGCTGGTAAACAGCTGGAAGATGGTCGGACATTGGCGGACTACAAC 11334343 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAAT 107795 || || ||||||||||| | ||| |||| | | ||| |||| || || |||| Sbjct 11334342 ATCCAGAAGGAGTCTACCCTTCACTTGGTTCTCCGTTTGAGAGGTGG----CATGCAAAT 11334287 Query 107796 ATTTGT 107801 |||||| Sbjct 11334286 ATTTGT 11334281 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || || | || || || ||||| || | ||| |||| ||| Sbjct 11327181 AATGCAAATATTTGTAAAGACGCTGACCGGGAAGACCATCACTCTTGAAGTGGAGAGCTC 11327122 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| ||| | | || || |||||| || || || || | ||| |||| Sbjct 11327121 T-GATACAATCGACAATGTGAAGGCAAAGATCCAAGACAAGGAGGGTATCCCCCCAGATC 11327063 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| ||||||||||| ||||| | | || |||| || |||| Sbjct 11327062 AGCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTACA 11327003 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||||| || || | ||| |||| Sbjct 11327002 ACATTCAAAAGGAATCCACCCTTCACCTGGT 11326972 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| ||||||||||| |||| || || ||||| || | ||| ||| | Sbjct 11334979 AATGCAAATATTTGTCAAAACACTAACTGGAAAGACCATCACACTTGAAGTTGAGAGTTC 11334920 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || |||||| || || || || | || || || Sbjct 11334919 AGATACAATTGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCA 11334860 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| ||||| ||||||||||| | | ||| |||| || || || Sbjct 11334859 GCAGAGGCTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGGACATTGGCTGATTATAA 11334800 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || |||||||| || | ||| |||| Sbjct 11334799 CATCCAGAAGGAGTCCACCCTTCACTTGGT 11334770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398867529479923