Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq35 122 2e-22 >seq35 Length=22702307 Score = 122 bits (134), Expect = 2e-22 Identities = 336/509 (66%), Gaps = 16/509 (3%) Strand=Plus/Minus Query 279845 GATGTTCATCGTTCTATTCCTCATTTAATGG---ATGGTTTGAAACCTTCACAGCGTAAG 279901 ||| |||| | ||||||||| | ||||| |||| ||||||| || | ||| Sbjct 13803553 GATCTTCAGAGGTCTATTCCT---TCAATGGTTGATGGCCTGAAACCAGGTCAAAGGAAG 13803497 Query 279902 ATTATATTCAGTTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCA 279961 ||| | || | | |||||| | || || || || ||| |||||||||| | Sbjct 13803496 ATTCTTTTTTGCTCTTTCAAGTGTAACTTTGTCAAAGAAGCGAAAATTGCTCAGTTTTCT 13803437 Query 279962 GGTTATGTTTCAGAACATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATT 280021 |||||||| || || ||| | | ||| ||||| ||||| |||| || | | ||| Sbjct 13803436 GGTTATGTGTCTGAGCATTCCGCTTACCATCATGGTGAGCAGTCTATTGCTAGCACCATT 13803377 Query 280022 GTAGGTCTTGCCCAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGT 280081 | || | || || || ||| ||| |||||| |||| || ||| |||||||||| Sbjct 13803376 ATTGGCATGGCACAGGACTTTGTGGGCAGCAACAACATAAACCTTCTTCTACCAAATGGT 13803317 Query 280082 CAATTTGGTTCTCGTATTCACAATGGAAAAGATCATGGTAGTGCTCGTTACATACATACA 280141 |||||||| ||| | ||| || |||||||||| ||||| | |||||| | || Sbjct 13803316 CAATTTGGAACTCCTCATCAGGGGGGGAAAGATCATGCAAGTGCAAGGTACATATACACT 13803257 Query 280142 TGTCTTTCAGATATTACAAACAAGTTATTTATC---AATTCTGATAATGCTTCATTAGAG 280198 | ||||| || ||| ||| | || || |||| | | |||||| Sbjct 13803256 CGACTTTCTCCAATCACA---CGGTTCCTGTTCCCAAAGGATGATGACGTCCTATTAGAC 13803200 Query 280199 TGGCTAGAGGATGATGGTCTTGCTATTGAACCAACATATTATGCTCCAATTATCCCTATG 280258 | || | || ||||| | |||||||||| || | |||| |||||||| || ||| Sbjct 13803199 TACTTAAATGAAGATGGACAATCTATTGAACCCACTTGGTATGTCCCAATTATTCCAATG 13803140 Query 280259 ATTCTTGTTAATGGTGCTCAAGGAATTGGAACAGGTTATTCTACATCTATCCCAATGTAC 280318 |||| || |||||| | |||| |||||| | || || | || | |||||| || Sbjct 13803139 GTTCTAGTCAATGGTAGTGAAGGCATTGGACCGAGTGGAGCT-CTTCCA-CCCAATTTAT 13803082 Query 280319 AATCCAATTGATATTATATTACAAATTCG 280347 || |||| ||||| |||| ||||| || Sbjct 13803081 AACCCAAGCGATAT--TATTGCAAATGCG 13803055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186783802083627