Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq57 109 4e-19 seq42 98.7 7e-16 >seq57 Length=24021853 Score = 109 bits (120), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | |||||| || ||||| ||||||||| ||||||||||||| ||| || || | Sbjct 5916777 ACGGAGCACCAAGTGCAGAGTTGACTCTTTTTGAATGTTGTAATCGGCGAGGGTTCGGCC 5916718 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| |||| || |||||||| ||||||| | |||||| ||| | || | || || || Sbjct 5916717 GTCTTCCAGCTGCTTTCCGGCGAAAATCAGCCTCTGCTGGTCTGGTGGAATGCCCTCCTT 5916658 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 || || ||| |||| || | ||| | ||||||| || || || | |||| Sbjct 5916657 ATCCTGGATCTTCGCTTTC-ACGTTGTCAATGGTGTCGGAGCTCTCGACCTCCAGGGTGA 5916599 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || | ||||||||||| |||||||| Sbjct 5916598 TGGTCTTTCCGGTGAGGGTTTTTACAAAAATCTGCAT 5916562 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||||| || || || ||| || || ||||||||||| | Sbjct 5917017 ACCACCGCGCAGACGAAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGC 5916958 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | || || ||||| ||||||| | |||||| ||| | || Sbjct 5916957 AAGAGTTCGCCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGTGG 5916898 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| ||| |||| || | ||| | ||||||| ||| | Sbjct 5916897 AATCCCTTCCTTGTCCTGAATCTTCGCTTTC-ACGTTGTCAATGGTGTCGGAGCTTTCGA 5916839 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | ||||| ||||| |||||||| Sbjct 5916838 CCTCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAAATCTGCAT 5916790 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||||| || || || |||||| || ||||||||||| | Sbjct 5891816 ACCACCACGCAGACGAAGCACCAAGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCCGC 5891757 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| |||| || || || || ||||||| | |||||| || | || Sbjct 5891756 GAGAGTTCGGCCGTCTTCCAGCTGCTTCCCCGCGAAAATCAGCCTCTGCTGGTCCGGTGG 5891697 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || || || |||| || | ||| | ||||||| ||| | Sbjct 5891696 AATGCCCTCCTTATCCTGGATCTTAGCTTTC-ACGTTGTCAATGGTGTCGGAGCTTTCGA 5891638 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || || || || |||| ||||| ||||| |||||||| Sbjct 5891637 CCTCTAGAGTAATTGTCTTTCCGGTTAGAGTTTTAACAAAAATCTGCAT 5891589 Score = 82.4 bits (90), Expect = 5e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||||||||| ||||| ||||| | || ||||| | || |||| |||| Sbjct 22348700 TGAAGTGTGGACTCTTTTTGGATGTTATAATCTGCAAGAGTGCGACCATCTTCCAGTTGT 22348641 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 || || ||||||||||| | ||||||||| | || | ||||| ||||| Sbjct 22348640 TTGCCAGCAAAAATCAATCTCTGCTGATCAGGAGGAATGCCTTCCTTGTC 22348591 >seq42 Length=30274277 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||||||| | |||| || || ||| |||||| || ||||| ||||| | Sbjct 11327638 CCACCTCTCAAACGAAGGACCAGGTGGAGTGTGGACTCTTTCTGAATGTTATAATCTGCC 11327697 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||| | | || || | || ||||| ||||||||||| | ||||| || | || Sbjct 11327698 AATGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCAGGGGGG 11327757 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| |||||| | | ||||| ||| | ||| || |||||| Sbjct 11327758 ATACCCTCCTTGTCTTGGATTTTC-GCCTTAACATTGTCAATGGTATCAGAACTTTCCAC 11327816 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || || || || || | ||||| |||||||||||||| Sbjct 11327817 TTCAAGGGTTATAGTCTTCCCAGTAAGGGTTTTAACAAAGATCTGCAT 11327864 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || |||||| ||| || || ||||||||||| | ||||| || | || ||| Sbjct 11520497 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGTGTCCGACCATCCTCC 11520438 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 || || || || ||||| |||| | |||||||||| | || | || || ||||| | Sbjct 11520437 AACTGCTTCCCTGCAAAGATCAGCCTCTGCTGATCTGGAGGGATCCCCTCCTTGTCCTGA 11520378 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGT 33716 ||||| ||| |||| || | |||||| ||| ||||| || | |||||||| Sbjct 11520377 ATTTTGGCCTTC-ACATTATCTATGGTGTCTGAGCT---CTCCACCTCTAGTGTGATCGT 11520322 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || || | || || ||||| ||||||||| Sbjct 11520321 CTTTCCCGTCAGGGTCTTCACAAATATCTGCATA 11520288 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||||||| | || | ||||| ||| ||||||||| ||||| ||||||| Sbjct 11334980 CCTCCTCTCAAACGAAGTACAAGGTGTAGGGTGGACTCTTTTTGAATGTTATAATCGGCC 11335039 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || | | || || | || ||||| ||||||||||| | ||||| || | || Sbjct 11335040 AAAGTCCTACCATCCTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCAGGGGGG 11335099 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| ||||| || | ||||| ||| | ||| || || || Sbjct 11335100 ATACCCTCCTTGTCTTGGATTTT-TGCCTTAACATTGTCAATGGTATCAGAACTCTCAAC 11335158 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || ||||| || || | || || |||||||||||||| Sbjct 11335159 TTCAAGAGTTATGGTTTTTCCAGTAAGGGTCTTAACAAAGATCTGCAT 11335206 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||||||| | ||||| || || ||| |||||| || ||||| ||||| | Sbjct 11481849 CCACCTCTCAAACGGAGAACCAAGTGAAGTGTGGACTCTTTCTGGATGTTATAATCAGCC 11481790 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||| || | || || | || || || |||||||| | | |||||| ||| | || Sbjct 11481789 AATGTCCGGCCATCCTCAAGCTGCTTACCTGCAAAAATGAGCCTCTGCTGGTCTGGGGGA 11481730 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTC 33698 | || || ||||| |||||| | || ||||| || | |||||| ||| || Sbjct 11481729 ATGCCCTCCTTGTCCTGGATTTTC-GCTTTAACATTATCGATGGTGTC---TGAACTCTC 11481674 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| || || || ||||| || | || || ||||| || ||||| Sbjct 11481673 AACTTCAAGGGTAATGGTCTTACCAGTAAGGGTCTTCACAAAAATTTGCAT 11481623 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 ||||| ||||||||||| || | | ||||| | || || | |||||||| ||||| Sbjct 11333876 TCTTTCTGTATGTTGTAGTCAGCCAAAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAG 11333935 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| | ||| || || | || | ||||| ||||| ||||| || | |||| Sbjct 11333936 ATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATTTT-TGCCTTGACATT 11333994 Query 33679 GTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTT 33734 ||| | ||||| ||| || || |||| ||||| |||||||| ||||| || || Sbjct 11333995 GTCAATTGTGTCTGAGCT---CTCAACTTCAAGAGTGATTGTTTTACCAGTTAAGGTCTT 11334051 Query 33735 TACAAAGATCTGCATA 33750 ||||| ||||||||| Sbjct 11334052 CACAAAAATCTGCATA 11334067 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||||||| | ||||| || || || ||| || || |||||||| || | Sbjct 11334296 CCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCC 11334355 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||| || | || |||| ||||| || ||||| || | | |||||| ||| | || Sbjct 11334356 AATGTCCGACCATCTTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGGTCTGGGGGA 11334415 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTC 33698 | ||| || ||||| ||||| |||| |||| || | |||||| ||| || Sbjct 11334416 ATACCCTCCTTGTCCTGGATTTTAGCTTTC-ACATTATCGATGGTGTC---TGAACTCTC 11334471 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| || || ||||| || || | || || ||||| || ||||| Sbjct 11334472 AACTTCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 11334522 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||||||| | ||||| || || || || || || ||||||||||||| Sbjct 11482077 CCACCTCTCAAACGGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCGGCC 11482018 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||| || | || || | || || || ||||| || | | |||||| ||| | || Sbjct 11482017 AATGTCCGACCATCTTCGAGCTGCTTACCAGCAAATATGAGCCTCTGCTGGTCTGGGGGG 11481958 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTC 33698 | ||| || ||||| ||||| || || ||| | || | |||||| ||| || Sbjct 11481957 ATACCCTCCTTGTCCTGGATTTT-TGCTTTAACGTTATCAATGGTGTC---TGAACTCTC 11481902 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| ||||| || || | || || ||||| || ||||| Sbjct 11481901 AACTTCAAGTGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 11481851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328696360405440