Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq42 96.9 3e-15 seq57 84.2 2e-11 >seq42 Length=30274277 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| ||||| | ||| | || | | |||| || || || ||||||||||| || || Sbjct 11482300 ACGTAAGCGGAGAACAAGGTGAAGGGTTGATTCCTTCTGTATGTTGTAGTCAGCCAAAGT 11482241 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| ||||| | | ||||||| | ||| || || || || || || Sbjct 11482240 TCGACCATCTTCTAGCTGCTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGTGGAATACC 11482181 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||||||| ||||| | || | ||| || | ||| ||||| | Sbjct 11482180 TTCCTTGTCCTGAATTTTTGCTTTCACATTATCAATAGTGTCTGAACTCTCTACTTCAAG 11482121 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||||||||||| || || || | ||||| |||||| Sbjct 11482120 GGTGATAGTTTTACCAGTAAGGGTCTTCACAAAAATTTGCATG 11482078 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || ||||| ||||| || || ||| ||| ||| || ||||| || || | | Sbjct 11482728 GATTCCTTCTGAATATTGTAATCTACCAAGGTCCGCCCATCCTCTAGCTGCTTTCCAGCA 11482669 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||||||||| ||||| || || || ||| ||| |||| Sbjct 11482668 AAGATGAGCCTCTGCTGATCTGGAGGGATGCCCTCCTTGTCTTGAATCTTTGCCTTCACA 11482609 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | |||||| || | || | ||||||||| ||||| || || Sbjct 11482608 TTATCTATGGTGTCAGAGCTCTCCACCTCTAGTGTGATCGTTTTACCTGTCAGGGTCTTC 11482549 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 11482548 ACAAAAATCTGCAT 11482535 >seq57 Length=24021853 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | |||||||||||||||||||||||||| | ||| || |||||| Sbjct 5916542 ACCAAGTGCAGAGTTGACTCTTTTTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCTTCC 5916483 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||||| ||||| | |||| || | ||| || ||||| || ||||| || ||||| Sbjct 5916482 AGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGAATGCCCTCCTTATC 5916427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476599838780520