Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq57 86.0 6e-12 seq42 84.2 2e-11 >seq57 Length=24021853 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||||||||| | |||||||| | ||||| | || ||||| | | Sbjct 5916562 ATGCAGATTTTTGTAAAAACCCTCACCGGAAAGACCATCACCCTGGAGGTCGAGAGCTCC 5916621 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| || || ||||| ||||| || || || || ||| Sbjct 5916622 GACACCATTGACAACGTGAAAGCGAAGATCCAGGATAAGGAGGGCATTCCACCAGACCAG 5916681 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || |||| || ||| || || || ||||| | ||| || ||||||||| Sbjct 5916682 CAGAGGCTGATTTTCGCCGGAAAGCAGCTGGAAGACGGCCGAACCCTCGCCGATTACAAC 5916741 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||||||||||| || || | || || ||| Sbjct 5916742 ATTCAAAAAGAGTCAACTCTGCACTTGGTG 5916771 >seq42 Length=30274277 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || | || |||||| | || || | ||||| || Sbjct 11335206 ATGCAGATCTTTGTTAAGACCCTTACTGGAAAAACCATAACTCTTGAAGTTGAGAGTTCT 11335147 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || |||||| || || |||||||| || || || ||| Sbjct 11335146 GATACCATTGACAATGTTAAGGCAAAAATCCAAGACAAGGAGGGTATCCCCCCTGACCAG 11335087 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| | |||| | || || || ||||| |||| ||| | | | |||||| || Sbjct 11335086 CAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAGGATGGTAGGACTTTGGCCGATTATAAC 11335027 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||||||||| |||||| | || | || | | ||||||||||||| Sbjct 11335026 ATTCAAAAAGAGTCCACCCTACACCTTGTACTTCGTTTGAGAGGAGGAA 11334978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445083790062240