Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq42 205 1e-46 seq11 100 4e-15 >seq42 Length=30274277 Score = 205 bits (226), Expect = 1e-46 Identities = 346/496 (70%), Gaps = 10/496 (2%) Strand=Plus/Minus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 |||||||||||| || ||||||||||| || |||||||| |||||||| ||||||||| Sbjct 25647491 TGGGAAATGTAC-AAGAAGGCCGAGGCGTCGTTTTGGACAGCCGAGGAAGTCGACCTCTC 25647433 Query 1455839 CGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGT 1455898 ||| | || |||| || | | ||||||| || ||||||| || | Sbjct 25647432 TCAGGACCAGCGTCAATGGGAAAACCTCACCAGCGACGAGAAGCACTTCATCAGTCATAT 25647373 Query 1455899 CCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTA 1455958 ||| ||||| || |||||| || || ||||| ||| ||||| ||||| | || | Sbjct 25647372 CCTTGCCTTCTT-CGCCGCTTCTGACGGAATCGTCCTCGAAAACCTCGCCGGAAGGTTCA 25647314 Query 1455959 TGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAA 1456018 |||| |||||||| | | ||||| ||| || || || || ||||| ||||| |||| Sbjct 25647313 TGAAGGAGGTCCAGGTCGCCGAGGCTCGTGCCTTCTATGGATTTCAGATTGCCATTGAAA 25647254 Query 1456019 ACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGA 1456078 |||||||||| || | ||| || || | || | || ||||||| || |||| Sbjct 25647253 ACATCCACTCCGAGATGTACAGTCTGTTGTTAGAATCGTATATCAAGGATCCAAAGGAGA 25647194 Query 1456079 AGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGG 1456138 | || ||||||| ||| ||||| || | || | || ||| || ||| | |||| Sbjct 25647193 AAAACAGGCTCTTTCACGCAATCGATACCATCCCCTGTGTAGCGAAGAAAGCCCAGTGGG 25647134 Query 1456139 CGATGAAGTGGATCAACAAGGAGGGCCTCGACA-CTTTGCCGAGCGGCTCGTCGGCTTTG 1456197 | | |||||| || ||| ||| | ||||||||| || || ||| || | Sbjct 25647133 CTCTCCGATGGATC------GACGGCTCCGAAACCTTTGCCGAACGCCTGCTCGCATTCG 25647080 Query 1456198 CC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGC 1456256 || |||| || |||||||| ||||| || || |||||| | || || ||||| ||||| | Sbjct 25647079 CCTGCGTGGAAGGCATCTTCTTCTCCGGAAGCTTCTGCTCGATATTCTGGCTAAAGAAAC 25647020 Query 1456257 GCGGCCTCATGCCCGG 1456272 |||| |||||||| || Sbjct 25647019 GCGGTCTCATGCCGGG 25647004 >seq11 Length=21508407 Score = 100 bits (110), Expect = 4e-15 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||| || || || | | ||| ||| |||| |||| || Sbjct 5192538 ATCTTCAAGGTGCTGAAGCAGGTCCATCCT-GA--CATCGGG--ATC-TCCAGCAAGGCC 5192591 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||||| || |||||||||| |||| | | | ||||| Sbjct 5192592 ATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAACTTGCCCAGGAGGCATCG 5192651 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || |||||||||| ||||||| |||||| | || |||||||||||||| || Sbjct 5192652 CGGCTGGCGCGCTACAACAAGAAGCCGACGATCACTTCTCGGGAGATCCAGACCGCAGTA 5192711 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | | | |||||| |||||| |||||| || || ||||| |||| Sbjct 5192712 CGATTGGTACTTCCCGGCGAGTTGGCCAAGCACGCTGTTTCGGAGGGAACCA 5192763 Score = 89.7 bits (98), Expect = 7e-12 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACC-GCATCG 725016 ||||| |||| ||||| |||||||||| || |||||||||| |||| || | Sbjct 5187844 CTCCAGCAAGGCCATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTTGC 5187903 Query 725017 GCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGA 725076 || ||||| || |||||||| | ||||||| |||||| | || |||| Sbjct 5187904 TCAG-GAGGCATCGCGGCTGGCGCGTTACAACAAGAAGCCGACGATCACTTCTCGGGAGA 5187962 Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 ||||||| ||||| || || | | | |||||| |||||| ||||||||| || |||| Sbjct 5187963 TCCAGACGGCCGTCCGATTGGTGCTTCCCGGCGAGTTGGCCAAGCACGCCGTTTCAGAGG 5188022 Query 725137 GCACCA 725142 |||||| Sbjct 5188023 GCACCA 5188028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177627266344934