Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq42 167 3e-36 seq12 141 1e-28 >seq42 Length=30274277 Score = 167 bits (184), Expect = 3e-36 Identities = 395/588 (67%), Gaps = 18/588 (3%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||||| |||||||| || |||| |||||| |||| ||||| || || || || || Sbjct 25646941 AAGCACGCGAAGTCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGTT 25647000 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAA 39732 | ||| ||||| ||||| || || || ||||| ||||| | |||| ||| | || || || Sbjct 25647001 AATCCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCG-AGCAGAAGCTTCCGGAGAA 25647059 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT--GTATCATTA 39790 |||||||||||| || || ||||| | || | || | | || | | | Sbjct 25647060 GAAGATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGC--CG 25647117 Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 | ||||| | ||||| | ||||||||| |||||| || || || || || || Sbjct 25647118 TCGATCCATCGGAGAGCCCACTGGGCTTTCTTCGCTACACAGGGGATGGTATCGATTGCG 25647177 Query 39851 TTAAAGAGATAATGTTTTTCATCACT--ATCTTTAACATATGTATCTATTAACAGACTAT 39908 | |||||| |||||||| | | ||| || | ||| | |||| |||||||| | Sbjct 25647178 TGAAAGAG--CCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGT 25647235 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 |||| || || |||||||||||||| || ||||||||||| || || | || || | Sbjct 25647236 ACATCTCGGAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGG 25647295 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | || ||||| || ||| | || | ||||| || ||||| ||| || Sbjct 25647296 CGACCTGGACCTCCTTCATGAACCTTCCGGCGAGGTTTTCGAGGACGATTCCGTCAGAAG 25647355 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCC 40088 |||| || || || | | ||| | || || | || || ||| || | || |||| Sbjct 25647356 CGGCGAAGAAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTGAGGTT-TTCC 25647414 Query 40089 AGTCATTGA----TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144 |||||| || | || | || ||||| || |||||||||||||||||||| Sbjct 25647415 ---CATTGACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCTGTCCAAAACGACGCCTCG 25647471 Query 40145 GCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATA 40192 ||||| |||||||| | ||| | ||| | || || || || || ||| Sbjct 25647472 GCCTTCTTGTACATTTCCCAGACTTCAGGGTACTGAATCGGGAACATA 25647519 >seq12 Length=21026613 Score = 141 bits (156), Expect = 1e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | |||||||| ||| | || | ||||| |||| ||| || Sbjct 18117777 TCCTCCTTGATCAACATAACGGGCAGTGTCATTGAACACCCGTAGCATAGGAACAATGCC 18117836 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||||||| ||||||||||||| | || ||||| ||| || ||| Sbjct 18117837 ATTGGATGTCCCATTTGTTCCACGAATATAACTTCCTGTGGCACGAATGTTATGAACAGA 18117896 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || || ||| | |||||| || | ||||||||||| Sbjct 18117897 AACACCAATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTTAGAGTGTCATATAT 18117956 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || || ||||||||| ||||| || ||| || |||||| Sbjct 18117957 TCCTTCAATACTATCATCTTTCATGCAAATAAGGAAGCAGCTA 18117999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686892425811480