Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq42 129 5e-25 >seq42 Length=30274277 Score = 129 bits (142), Expect = 5e-25 Identities = 238/344 (69%), Gaps = 4/344 (1%) Strand=Plus/Minus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || ||||| ||||| |||||||| ||||| || || || || ||||||||||| || || Sbjct 25647281 TTCTATGGATTTCAGATTGCCATTGAAAACATCCACTCCGAGATGTACAGTCTGTTGTTA 25647222 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || |||| ||||| ||| | ||||| | | | ||| | || || || || | Sbjct 25647221 GAATCGTATATCAAGGATCCAAAGGAGAAAAACAGGCTCTTTCACGCAATCGATACCATC 25647162 Query 44063 CC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTT 44121 || || | | | ||||| | ||||| || |||||| | || | || Sbjct 25647161 CCCTGTGTAGCGA-AGAAAGCCCAGTGGGCTCTCCGATGGATCGACGGCTCCGAAACCTT 25647103 Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TG 44180 || ||||| || |||| || || ||||||||||| ||||| || ||| || || Sbjct 25647102 TGCCGAACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATCTTCTTCTCCGGAAGCTTCTG 25647043 Query 44181 CGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGT 44240 | | ||||| ||| |||||||||| ||| | ||||| || || || || |||||||||| Sbjct 25647042 CT-CGATATTCTGGCTAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCAAATGAGT 25646984 Query 44241 TAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 |||| || || || |||||||| ||||| || || |||||| Sbjct 25646983 TAATCTCGCGAGACGAGGGCTTACACTGCGACTTCGCGTGCTTG 25646940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446762501535