Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq57 113 4e-20 seq42 102 7e-17 seq49 95.1 1e-14 seq23 86.0 5e-12 >seq57 Length=24021853 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||||| || | || || ||||| || |||||||| ||| Sbjct 5916332 CCTCCACGAAGACGGAGGACCAAGTGAAGAGTTGACTCTTTCTGGATATTGTAATCGGCA 5916273 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | ||| | ||||||||||| || ||||| | || || | ||| || ||||| || Sbjct 5916272 AGGGTTCGCCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGA 5916213 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || ||||||| ||| | | | || | ||||||| | ||| ||| Sbjct 5916212 ATACCCTCCTTGTCCTGGATCTTGGCTTTAACGTTGTCGATCGTGTCTGAGCTTTCGACT 5916153 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| || | || || || |||||||||||||| || ||||| Sbjct 5916152 TCCAAAGTAATGGTCTTTCCTGTAAGAGTTTTCACAAATATCTGCAT 5916106 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||||| || | || || ||||| || |||||||| ||| Sbjct 5891359 CCTCCACGGAGACGGAGGACCAAGTGAAGAGTTGACTCTTTCTGGATATTGTAATCGGCA 5891300 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | ||| | ||||||||||| || ||||| | || || | ||| || ||||| || Sbjct 5891299 AGGGTTCGCCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGA 5891240 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || ||||||| ||| | | || | ||||| | | ||| ||| Sbjct 5891239 ATACCCTCCTTGTCCTGGATCTTGGCTTTAACATTGTCGATGGTGTCGGAGCTTTCGACT 5891180 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| || | || || || ||||| |||||||| || ||||| Sbjct 5891179 TCCAAAGTAATGGTCTTTCCTGTAAGAGTCTTCACAAATATCTGCAT 5891133 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||||| || | || || ||||||||||| ||||||||| Sbjct 5916560 CCTCCACGAAGACGGAGCACCAAGTGCAGAGTTGACTCTTTTTGAATGTTGTAGTCGGCG 5916501 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | ||||| ||||| ||||| ||| | || || | ||| || || || || Sbjct 5916500 AGGGTTCGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGA 5916441 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| |||||| |||| | | || | ||||| | | ||| || Sbjct 5916440 ATGCCCTCCTTATCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCGACC 5916381 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || || || ||||||||||| || ||||| Sbjct 5916380 TCCAGGGTGATGGTCTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 5916334 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||||| || | || || ||||||||||| ||||| ||| Sbjct 5916788 CCTCCACGAAGACGGAGCACCAAGTGCAGAGTTGACTCTTTTTGAATGTTGTAATCGGCG 5916729 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || ||||||| ||||| || |||||| |||| || | ||| || || || || Sbjct 5916728 AGGGTTCGGCCGTCTTCCAGCTGCTTTCCGGCGAAAATCAGCCTCTGCTGGTCTGGTGGA 5916669 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| |||||| ||||| | | || | ||||| | | || || Sbjct 5916668 ATGCCCTCCTTATCCTGGATCTTCGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCGACC 5916609 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || || || ||||| ||||| || ||||| Sbjct 5916608 TCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTTACAAAAATCTGCAT 5916562 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||||| || | ||| || ||||| || || |||||||| Sbjct 5891587 CCTCCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCTTTCTGGATGTTGTAGTCAGCG 5891528 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | ||||| ||||| ||||| ||| | || || | ||| || ||||| || Sbjct 5891527 AGGGTTCGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTCCGGTGGA 5891468 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| |||| | | || | ||||| | | ||| || Sbjct 5891467 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCGACC 5891408 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || || || ||||||||||| || ||||| Sbjct 5891407 TCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAAATCTGCAT 5891361 >seq42 Length=30274277 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-G 27077 |||| || | ||| || | ||||| || | ||||| || || || || |||||||| | Sbjct 11334294 TGCCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCG 11334353 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 | |||| || | ||||| ||||||||||| || | ||||| | ||| || || || Sbjct 11334354 CCAATGTC-CGACCATCTTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGGTCTGGG 11334412 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | |||||| || || ||| || ||||| | || | ||||||| ||| Sbjct 11334413 GGAATACCCTCCTTGTCCTGGATTTTAGCTTTCACATTATCGATGGTGTCTGAACTCTCA 11334472 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || |||| ||| || || || || |||||||| |||||||| Sbjct 11334473 ACTTCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 11334522 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | ||| || | ||||| || | || || || || || || ||||| ||| Sbjct 11482079 TGCCACCTCTCAAACGGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCGG 11482020 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | || | ||||||||||| ||||| || | ||||| | ||| || || || | Sbjct 11482019 CCAATGTCCGACCATCTTCGAGCTGCTTACCAGCAAATATGAGCCTCTGCTGGTCTGGGG 11481960 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||| || || ||| || ||| | | | || | ||||||| |||| Sbjct 11481959 GGATACCCTCCTTGTCCTGGATTTTTGCTTTAACGTTATCAATGGTGTCTGAACTCTCAA 11481900 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || || |||| ||| || || || || |||||||| |||||||| Sbjct 11481899 CTTCAAGTGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 11481851 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || ||||||||||| || || | | ||| | || || ||||| || || Sbjct 11333642 GTAGATTCCTTCTGAATATTGTAATCTGCCAAGGTCCGCCCATCCTCTAGCTGCTTTCCA 11333701 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | ||| ||||| || || | |||||| || || ||||| ||| Sbjct 11333702 GCAAATATGAGCCTCTGCTGATCTGGAGGGATACCCTCCTTGTCTTGAATCTTTGCCTTC 11333761 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| ||||| | | || || || || || |||| ||| || ||||| || Sbjct 11333762 ACATTATCTATGGTGTCAGAGCTCTCCACCTCAAGTGTGATAGTTTTACCTGTCAGGGTC 11333821 Query 27231 TTCACAAAGATTTGCATAGCT 27251 |||||||| || |||||| || Sbjct 11333822 TTCACAAATATCTGCATACCT 11333842 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || ||||||||||| || | ||| || | ||||| ||||| ||||| Sbjct 11334098 GTTGATTCCTTCTGTATATTGTAGTCAGCCAAAGTT-CGACCATCTTCTAGCTGCTTACC 11334156 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | || || | ||| || || || || | ||| || || || ||| || ||| Sbjct 11334157 AGCAAAGATTAGCCTCTGCTGGTCGGGTGGAATACCTTCCTTGTCCTGGATTTTTGCTTT 11334216 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | || | |||||||| |||||||| || || |||| ||| || || || || Sbjct 11334217 CACATTGTCGATAGTGTCTGAACTCTCAACTTCAAGGGTGATAGTTTTACCAGTAAGGGT 11334276 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||||| |||||||| Sbjct 11334277 CTTCACAAATATTTGCAT 11334294 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || ||||||||||| || || | | ||| | || || ||||| || || Sbjct 11482731 GTAGATTCCTTCTGAATATTGTAATCTACCAAGGTCCGCCCATCCTCTAGCTGCTTTCCA 11482672 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | ||| ||||| || || | ||||| || || ||||| ||| Sbjct 11482671 GCAAAGATGAGCCTCTGCTGATCTGGAGGGATGCCCTCCTTGTCTTGAATCTTTGCCTTC 11482612 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| ||||| | | || || ||||| || || | ||| || ||||| || Sbjct 11482611 ACATTATCTATGGTGTCAGAGCTCTCCACCTCTAGTGTGATCGTTTTACCTGTCAGGGTC 11482552 Query 27231 TTCACAAAGATTTGCATAGCT 27251 |||||||| || |||||| || Sbjct 11482551 TTCACAAAAATCTGCATACCT 11482531 >seq49 Length=17126926 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||||||| | | | || |||| || |||||||| || Sbjct 13269904 GTTGACTCCTTCTGGATATTGTAGTCGGCTAGGGTTCGGCCGTCCTCCAGCTGTTTGCCA 13269845 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || |||||||| | || || || || ||||||| || Sbjct 13269844 GCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 13269785 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | |||||| ||||| ||||| | || ||||| || || Sbjct 13269784 ACATTATCGATCGTGTCAGATGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTC 13269725 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| || || ||||| Sbjct 13269724 TTCACGAAAATCTGCAT 13269708 >seq23 Length=22385789 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | | || |||| || |||||||| || Sbjct 4579857 GTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCCAGCTGTTTTCCA 4579798 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | || || || || |||||| || Sbjct 4579797 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTG 4579738 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | || | ||||| | | |||||| |||| ||||| | || ||||| || ||| Sbjct 4579737 GCATTGTCGATGGTGTCAGACGATTCAACCTCTAAGGTTATGGTCTTCCCCGTTAGGGTT 4579678 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 4579677 TTCACGAAGATCTGCAT 4579661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424924523860584