Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq35 120 4e-22 seq51 109 7e-19 seq12 104 3e-17 seq42 98.7 1e-15 >seq35 Length=22702307 Score = 120 bits (132), Expect = 4e-22 Identities = 275/412 (67%), Gaps = 4/412 (1%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | |||||||| |||||||| | || ||||| | ||||| Sbjct 2305966 TCAAGAATGTCTGCCCTGTTAGTGGCTGCAATAACAATTATACCAGTGTTTCCTTCAAAA 2305907 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | || |||| ||||||||| || ||||||||| || | | Sbjct 2305906 CCATCCATTTCAGTCAAAAGCTGGTTAAGTGTTTGTTCCCTTTCATCATTTCCT--CCTC 2305849 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | ||| || || |||||||| ||||||| || ||||| || | Sbjct 2305848 CAATTCCAGTTCCTCTTTGGCGCCCAACAGCATCAATTTCATCAACAAATACAATGCAGG 2305789 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | ||| || ||| | | || ||||| || || || ||||| |||||||||| Sbjct 2305788 GAGCATTCTCCTTGGCCTTCTTGAAAAGATCACGCACTCTAGATGCACCAACACCAACAA 2305729 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGA 11780 ||||||| ||||| | | | ||| || ||||| ||| || |||||| || | Sbjct 2305728 ACATCTCAACAAACTCAGAACCTGAGATAGAGAAAAATGGAACACCTGCTTCACCAGCAA 2305669 Query 11781 TGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGG 11840 | || || || || ||||| || || |||||| || | ||||| | ||| | Sbjct 2305668 TTGCCTTCGCTAGCAGAGTCTTCCCAGTTCCTGGCGGGCCAACAAGAAGAACACCTTTAG 2305609 Query 11841 GGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 |||| || ||| | || |||||||||| | || ||||| ||||| Sbjct 2305608 GGATGCGAGCTCCAACTGCAGTGAATCTCTCGGGCTTTTTCAGAAACTCCAC 2305557 >seq51 Length=29360087 Score = 109 bits (120), Expect = 7e-19 Identities = 192/280 (69%), Gaps = 10/280 (4%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || ||||||||||| || | | ||||| || ||||| |||||||||||||| | Sbjct 1216651 AATCCATCCATCTCTGTCAACAGCTGATTGATGGTTTGCTCTCTCTCATCATTCCCACCT 1216710 Query 11600 ATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 | ||| || | | ||| | ||||| |||||||| ||||||||||| ||||| || Sbjct 1216711 CCAAGACCTGCCCCTCTCTGCCTCCCCACTGCATCAATTTCATCAATGAACACAATGCAG 1216770 Query 11660 GG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || |||||||| || | ||||| | || || || || || ||||| | Sbjct 1216771 GGTGCCTTTGATTTT-----GCCTTCTCAAACAAGTCCCGGACTCTGGATGCTCCCACTC 1216825 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774 | ||||||| || || || | | ||| | |||| || |||||| ||| || ||| | Sbjct 1216826 CTACAAACAATTCAACGAATTCAGAGGCTGCGCACGAGAAGAATGGCACACCTGCTTCTC 1216885 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || | |||| ||| || |||||||| || || || || Sbjct 1216886 CGGCCACTGCTCTGGCCAGTAGGGTCTTGCCGGTTCCGGG 1216925 >seq12 Length=21026613 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || |||||||| || |||||||| || || |||| || ||| ||||| || || Sbjct 18118181 TGGGGCCTTGGTGTTCCTGCATTGAAAAGAGTGGGTGAAGCATGAGTGAACCAACGCTGA 18118240 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 ||||| | |||||| | | ||||||||||||| ||| ||| || || | | Sbjct 18118241 GACATTAAATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGAATTCCAACAGAA 18118300 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAG 112120 || | ||| ||||||| ||| || |||| | | | || | | | | || ||| Sbjct 18118301 ACTCTCATCAACATGTGCTGAGGCCTTTCTACAACCTTCCCTTGAATCTTCAGGAGGTAG 18118360 Query 112121 CTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | ||||||||||||||| |||||||||| || ||||| ||||||| Sbjct 18118361 GACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAATCAAAGTCCCG 18118407 Score = 100 bits (110), Expect = 4e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || || || ||||||||||||||||| ||||| || ||||| | |||||||| | Sbjct 18116819 GGTAGAGCAATTGATGCCAAATTGCATACAGCAGTTTCATCAGCACTGGTGTACTCAATG 18116878 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || ||||||||||| ||| ||||| || |||| ||||| ||| ||||| || || Sbjct 18116879 ATCTCAGTACATAAGTTTGAAGATTTAATGGTACCCAGATTCTGTTGATTACTTTTTTTA 18116938 Query 111350 TTGCACGCATCCT 111362 ||||| | ||||| Sbjct 18116939 TTGCAAGAATCCT 18116951 >seq42 Length=30274277 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 ||||| ||||| || || | ||||||||||| || || ||||||||||| || ||| Sbjct 25646965 CCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGTTAATCCCGGCATGAGACCGCGTTTC 25647024 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| | || | |||||| |||||||||||||| || ||||| || || || Sbjct 25647025 TTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAGATGCCTTCCACGCAGGCGAAT 25647084 Query 122797 GCAAAAAGGCGTTCGGCGAAGG 122818 || | ||||||||||| |||| Sbjct 25647085 GCGAGCAGGCGTTCGGCAAAGG 25647106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628017029287200