Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq42 100 4e-16 seq51 87.8 2e-12 >seq42 Length=30274277 Score = 100 bits (110), Expect = 4e-16 Identities = 178/257 (69%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||| || ||||| | ||||| ||||| | || ||||||||||| || ||| Sbjct 25646965 CCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGTTAATCCCGGCATGAGACCGCGTTTC 25647024 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| |||| || || || ||||||||||| || ||||| || ||||| Sbjct 25647025 TTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAGATGCCTTCCACGCAGGCGAAT 25647084 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 || | || || || ||||||| ||| || | ||| | |||||||| Sbjct 25647085 GCGAGCAGGCGTTCGGCAAAGGTTTCGGA---GCCGTCGATCCATCGGAGAGCCCACTGG 25647141 Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCT--G 130271 || || ||| | | ||| |||| ||| | ||| || | |||||| ||| |||||| Sbjct 25647142 GCTTTCTTCGCTACACAGGGGATGGTATCGATTGCGTGAAAGAG--CCTGTTTTTCTCCT 25647199 Query 130272 ATGGATCTTTGATGTAC 130288 |||||| ||||| ||| Sbjct 25647200 TTGGATCCTTGATATAC 25647216 >seq51 Length=29360087 Score = 87.8 bits (96), Expect = 2e-12 Identities = 188/281 (67%), Gaps = 10/281 (4%) Strand=Plus/Plus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 || ||||||||||| ||||| || |||||||||||||| || | ||||||||| || Sbjct 1216651 AATCCATCCATCTCTGTCAACAGCTGATTGATGGTTTGCTCTCTCTCATCATTCCCACCT 1216710 Query 14213 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAT 14272 | ||| || | | ||| | || || || ||||||||||| ||||| || || || Sbjct 1216711 CCAAGACCTGCCCCTCTCTGCCTCCCCACTGCATCAATTTCATCAATGAACACAATGCAG 1216770 Query 14273 GG-----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACAC 14327 || |||||||| || ||||| | || || ||||| || || || | Sbjct 1216771 GGTGCCTTTGATTTT-----GCCTTCTCAAACAAGTCCCGGACTCTGGATGCTCCCACTC 1216825 Query 14328 CCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCAC 14387 | ||||||| || || || | | ||| | || || ||| || || | ||| | Sbjct 1216826 CTACAAACAATTCAACGAATTCAGAGGCTGCGCACGAGAAGAATGGCACACCTGCTTCTC 1216885 Query 14388 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 | || | |||| ||| || |||||||| || || || ||| Sbjct 1216886 CGGCCACTGCTCTGGCCAGTAGGGTCTTGCCGGTTCCGGGT 1216926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618420458050920