Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq35 123 3e-23 seq42 95.1 1e-14 seq12 95.1 1e-14 seq51 86.0 7e-12 >seq35 Length=22702307 Score = 123 bits (136), Expect = 3e-23 Identities = 312/463 (67%), Gaps = 16/463 (3%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9614 ||||| || || | | || || || || || |||| ||||| |||||| || ||| Sbjct 2305966 TCAAGAATGTCTGCCCTGTTAGTGGCTGCAATAACAATTATACCAGTGTTTCCTT--CAA 2305909 Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9674 |||||||||| || |||||||| ||||||| |||||||||| ||||||||| || | Sbjct 2305908 AACCATCCATTTCAGTCAAAAGCTGGTTAAGTGTTTGTTCCCTTTCATCATTTCCT--CC 2305851 Query 9675 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | | | |||| | | ||| || || |||||||| ||||||| || || ||||| Sbjct 2305850 TCCAATTCCAGTTCCTCTTTGGCGCCCAACAGCATCAATTTCATCAACAAATACAATGCA 2305791 Query 9733 TGGTTGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 9789 || ||| | | | | ||| ||| ||||| || ||| || | || || ||||| Sbjct 2305790 GGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACG--CACTCTAGATGCACCAACACC 2305734 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 9848 |||||||||||| ||||| | | | | | || | || || || ||| | ||||| Sbjct 2305733 AACAAACATCTCAACAAACTCAGAACCTG-AGATAGAGAAAAATGGAACACCTGCTTCAC 2305675 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9908 | ||||| || || || |||||||| || || |||||| || | || || ||| Sbjct 2305674 CAGCAATTGCCTTCGCTAGCAGAGTCTTCCCAGTTCCTGGCGGGCCAACAAGAAGAACAC 2305615 Query 9909 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 9968 || || || || ||| | || | ||||||| || | || ||||| ||||| | Sbjct 2305614 CTTTAGGGATGCGAGCTCCAACTGCAGTGAATCTCTCGGGCTTTTTCAGAAACTCCACTA 2305555 Query 9969 TTTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 ||| || || | ||| || | || | ||| ||||||| Sbjct 2305554 CTTCCATGAAATCTTGTTTTGCTTCATCTACCCCAGCAACATC 2305512 >seq42 Length=30274277 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 ||||||| || || || ||||||| || || || || || ||||||||||| || || Sbjct 25647106 CCTTTGCCGAACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATCTTCTTCTCCGGAAGCT 25647047 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 ||||| | || | ||||| ||||| || ||||||||||| || | ||||| || | Sbjct 25647046 TCTGCTCGATATTCTGGCTAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCAAATG 25646987 Query 94916 AGCTTATCTCTCGTGACGAGGG 94937 || | ||||| || |||||||| Sbjct 25646986 AGTTAATCTCGCGAGACGAGGG 25646965 >seq12 Length=21026613 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCA-ACGGCT 104199 |||| || | || ||| |||||| ||||||||||||||| | ||| || | | | | Sbjct 18118404 GACTTTGATTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCCTACCTCCTGAAGATT 18118345 Query 104200 CGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCA 104259 | | || ||| | |||| || ||| ||||||| ||| | || | | || ||||| Sbjct 18118344 CAAGGGAAGGTTG-TAGAAAGGCCTCAGCACATGTTGATGAGAGTTTCTGTTGGAATTCA 18118286 Query 104260 TGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 104319 ||| ||||||||||||| | | |||||| | ||||| || || ||||| Sbjct 18118285 CAAGGATGACATTGATTCTGCTATCAAAACATACCATTTAATGTCTCAGCGTTGGTTCAC 18118226 Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 ||| || |||| || || |||||||| || |||||||| |||||| Sbjct 18118225 TCATGCTTCACCCACTCTTTTCAATGCAGGAACACCAAGGCCCCAA 18118180 >seq51 Length=29360087 Score = 86.0 bits (94), Expect = 7e-12 Identities = 187/280 (67%), Gaps = 10/280 (4%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || ||||||||||||||||| || || || || ||||| || | ||||||||| | Sbjct 1216651 AATCCATCCATCTCTGTCAACAGCTGATTGATGGTTTGCTCTCTCTCATCATTCCCACCT 1216710 Query 9674 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 | ||| || | | ||| | ||||| |||||||| ||||||||||| || ||||| Sbjct 1216711 CCAAGACCTGCCCCTCTCTGCCTCCCCACTGCATCAATTTCATCAATGAACACAATGCAG 1216770 Query 9734 GG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788 || |||||||| || ||||| | ||||| || | || ||||| | Sbjct 1216771 GGTGCCTTTGATTTT-----GCCTTCTCAAACAAGTCCCGGACTCTGGATGCTCCCACTC 1216825 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848 | ||||||| || || || | | ||| | || || ||| || ||| | ||| | Sbjct 1216826 CTACAAACAATTCAACGAATTCAGAGGCTGCGCACGAGAAGAATGGCACACCTGCTTCTC 1216885 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | || | |||| ||| || || ||||| || || || || Sbjct 1216886 CGGCCACTGCTCTGGCCAGTAGGGTCTTGCCGGTTCCGGG 1216925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583246896520680