Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq42 125 8e-24 >seq42 Length=30274277 Score = 125 bits (138), Expect = 8e-24 Identities = 361/553 (65%), Gaps = 2/553 (0%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || | |||||| || | |||| |||| ||||| || | || || ||| Sbjct 25647515 TTCCCGATTCAGTACCCTGAAGTCTGGGAAATGTACAAGAAGGCCGAGGCGTCGTTTTGG 25647456 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGAC 59681 | | |||||| | |||||| | |||| | | ||||| || |||| |||| Sbjct 25647455 ACAGCCGAGGAAGTCGACCTCTCTCAGGACCAGCGTCAATGGGAAAACCTCACCAGCGAC 25647396 Query 59682 GAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATG 59741 ||| |||| ||||||| |||| ||||||||||| || ||| ||||| || | Sbjct 25647395 GAGAAGCACTTCATCAGTCATATCCTTGCCTTCTTCGCCGCTTCTGACGGAATCGTCCTC 25647336 Query 59742 GAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTAC 59801 ||||| | | | | || ||||| |||||| | |||||||| || | ||||| Sbjct 25647335 GAAAACCTCGCCGGAAGGTTCATGAAGGAGGTCCAGGTCGCCGAGGCTCGTGCCTTCTAT 25647276 Query 59802 GCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAG 59861 | | |||| || || ||||||||||||| |||| || || | || | Sbjct 25647275 GGATTTCAGATTGCCATTGAAAACATCCACTCCGAGATGTACAGTCTGTTGTTAGAATCG 25647216 Query 59862 TTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCA 59921 | |||||||||| | ||||| | || || | || || || || |||| Sbjct 25647215 TATATCAAGGATCCAAAGGAGAAAAACAGGCTCTTTCACGCAATCGATACCATCCCCTGT 25647156 Query 59922 GTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACA 59980 || | ||||| | ||||| | | ||||| || || | | | ||||| | Sbjct 25647155 GTAGCGAAGAAAGCCCAGTGGGCTCTCCGATGGATCGACGGCTCC-GAAACCTTTGCCGA 25647097 Query 59981 ACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTAT 60040 ||| || | || || || ||||||||||| ||||||||||| || ||||| | || Sbjct 25647096 ACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATCTTCTTCTCCGGAAGCTTCTGCTCGAT 25647037 Query 60041 TTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTC 60100 |||||||| || || || || ||||||||||| | | |||||| || ||| | || || Sbjct 25647036 ATTCTGGCTAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCAAATGAGTTAATCTC 25646977 Query 60101 CCGGGACGAGGGC 60113 || ||||||||| Sbjct 25646976 GCGAGACGAGGGC 25646964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548511724540080