Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq9 98.7 1e-15 seq42 95.1 1e-14 seq23 89.7 6e-13 seq51 87.8 2e-12 seq1662 84.2 2e-11 seq6 84.2 2e-11 >seq9 Length=25021643 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1197605 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1197664 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 1197665 TGAGCTACGAAAGCAA 1197680 >seq42 Length=30274277 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1219494 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1219553 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 1219554 TGAGCTACGAAAGC 1219567 >seq23 Length=22385789 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 10557558 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 10557617 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 10557618 TGAGCTATGAAAGCAA 10557633 >seq51 Length=29360087 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 ||| ||| ||| |||| |||| |||| ||||||||||||||||||||||||||| || Sbjct 7442898 AGAATGCGTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 7442839 Query 79680 CAATTGAGCTACGAAAGCAA 79699 ||| ||||||| |||||||| Sbjct 7442838 CAACTGAGCTATGAAAGCAA 7442819 >seq1662 Length=244511 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 186317 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 186258 Query 79684 TGAGCTACGAAAGCAAAAGGGGA 79706 ||||||| |||||| | | |||| Sbjct 186257 TGAGCTATGAAAGCTACAAGGGA 186235 >seq6 Length=23867706 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 5477065 GAATGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 5477006 Query 79681 AATTGAGCTACGAAAGCAAAAGG 79703 || ||||||| |||||| | ||| Sbjct 5477005 AACTGAGCTATGAAAGCTACAGG 5476983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547202955738600